View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4586_low_5 (Length: 577)
Name: NF4586_low_5
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 133 - 470
Target Start/End: Original strand, 17454487 - 17454824
Alignment:
| Q |
133 |
tttaacttttaagtaacattgatcttcattggttttttaacctattgcagcttatcccaaatgcttttatgaacttggtgcattcaaaaagaaaggtaat |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17454487 |
tttaacttttaagtaacattgatcttcattggttttttaacctattgcagcttatcccaaatgcttttatgaacttggtgcattcaaaaagaagggtaat |
17454586 |
T |
|
| Q |
233 |
aaaggattctatcctaagagatcgtagaggaagagattggtatgtcaaagcgcgtcgtattggtgacgagttctattttgatgacggctggaagaaattt |
332 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17454587 |
aaaggattttatcctaagagatcgtagaagaagagattggtatgtcaaagcgcgtcgtattggtgacgagttctattttgatgatggctggaagaaattt |
17454686 |
T |
|
| Q |
333 |
agacaagaaaattgtttagtggagaatgacttccttgtttttactcatattgaaaacaatgtattcaaattcaaaattcttgaactatcatcaatgtgtg |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17454687 |
agacaagaaaattgtttagtggagaatgacttccttgtttttactcatattgaaaacaatgtattcaaattcaaaattcttgaactatcatcaatgtgtg |
17454786 |
T |
|
| Q |
433 |
aaaagatgccggtgatggatgaggaggaaaataataat |
470 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
17454787 |
aaaagatgccggtgatggaagatgaggaaaataataat |
17454824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 165 - 438
Target Start/End: Complemental strand, 17394310 - 17394037
Alignment:
| Q |
165 |
ttttttaacctattgcagcttatcccaaatgcttttatgaacttggtgcattcaaaaagaaaggtaataaaggattctatcctaagagatcgtagaggaa |
264 |
Q |
| |
|
||||| || |||||||||| |||||||||||||||| |||||||| ||| ||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17394310 |
tttttaaatctattgcagcgtatcccaaatgcttttgtgaacttgatgcgttcaaaaaggaaggtaataaaggattttatcctaagagatcgtagaggaa |
17394211 |
T |
|
| Q |
265 |
gagattggtatgtcaaagcgcgtcgtattggtgacgagttctattttgatgacggctggaagaaatttagacaagaaaattgtttagtggagaatgactt |
364 |
Q |
| |
|
|||||||| |||||||||| |||| |||||| || ||| | |||||||| | ||||||||| |||||||| | ||||||| ||||| |||| |||| || |
|
|
| T |
17394210 |
gagattggcatgtcaaagctcgtcttattggcgatgagctttattttgacggtggctggaagcaatttagagaggaaaattctttagaggaggatgattt |
17394111 |
T |
|
| Q |
365 |
ccttgtttttactcatattgaaaacaatgtattcaaattcaaaattcttgaactatcatcaatgtgtgaaaaga |
438 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17394110 |
ccttgtttttacacatattgaaaataccgtattcaggttcaaaattcttgaactatcatcgatgtgtgaaaaga |
17394037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 179 - 470
Target Start/End: Original strand, 17460750 - 17461041
Alignment:
| Q |
179 |
gcagcttatcccaaatgcttttatgaacttggtgcattcaaaaagaaaggtaataaaggattctatcctaagagatcgtagaggaagagattggtatgtc |
278 |
Q |
| |
|
|||||||||||||| |||||| |||| ||| || ||||||| || | || | ||||||| |||||||||||||| ||||||||| |||||| ||||| |
|
|
| T |
17460750 |
gcagcttatcccaacggcttttgtgaaattgatgatttcaaaacaaaggctattgaaggattttatcctaagagatcatagaggaagtgattggcatgtc |
17460849 |
T |
|
| Q |
279 |
aaagcgcgtcgtattggtgacgagttctattttgatgacggctggaagaaatttagacaagaaaattgtttagtggagaatgacttccttgtttttactc |
378 |
Q |
| |
|
|||| | || |||||| || | | ||||||||||| || ||||| ||| ||| ||||||||| ||||| ||| ||||||||||||||||| || | |
|
|
| T |
17460850 |
aaagtgtgttctattggcaacaaactttattttgatgatggttggaaactattcagagaagaaaattctttagaggacaatgacttccttgttttcacgc |
17460949 |
T |
|
| Q |
379 |
atattgaaaacaatgtattcaaattcaaaattcttgaactatcatcaatgtgtgaaaagatgccggtgatggatgaggaggaaaataataat |
470 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||| ||| ||||| ||||||||||||| |||| |
|
|
| T |
17460950 |
atattgaaaacaatgtattcaagttcaaaatccttgaactatcatcaatgtgtcaaaagatgaaggtaatggacgaggaggaaaatactaat |
17461041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 17454424 - 17454493
Alignment:
| Q |
19 |
ttccttaaagagaagcactctgagagaatggtattttcttattcataatcatgcttcatctaatttaact |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17454424 |
ttccttaaagagaagcactctgagagaatggtattttcttattcataatcatgcttcatctaatttaact |
17454493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 17460586 - 17460632
Alignment:
| Q |
29 |
agaagcactctgagagaatggtattttcttattcataatcatgcttc |
75 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
17460586 |
agaagcactctgatagaatggtattttcttattcttaatcatgcttc |
17460632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 175 - 470
Target Start/End: Complemental strand, 40235883 - 40235588
Alignment:
| Q |
175 |
tattgcagcttatcccaaatgcttttatgaacttggtgcattcaaaaagaaaggtaataaaggattctatcctaagagatcgtagaggaagagattggta |
274 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| | ||| ||| ||| || |||| | || ||| ||||||||| |||| |||||||| ||||||| | |
|
|
| T |
40235883 |
tattgcagcttatcccaattgcttttgtgaagctcatgctttcgaaacaaagggtattgaaatattttatcctaagggatcatagaggaacagattggca |
40235784 |
T |
|
| Q |
275 |
tgtcaaagcgcgtcgtattggtgacgagttctattttgatgacggctggaagaaatttagacaagaaaattgtttagtggagaatgacttccttgttttt |
374 |
Q |
| |
|
||||||||| ||| ||||||| | || | ||||||||||| || ||||| ||| ||| ||||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
40235783 |
tgtcaaagcacgttctattggtcgcaagctttattttgatgatggttggaaactattcagagaagaaaattctttagaggacaatgacttccttgttttc |
40235684 |
T |
|
| Q |
375 |
actcatattgaaaacaatgtattcaaattcaaaattcttgaactatcatcaatgtgtgaaaagatgccggtgatggatgaggaggaaaataataat |
470 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||| ||||||| |||||||||||||||| |
|
|
| T |
40235683 |
agacatattgaaaacaatgtattcaagttcaaaatttatgaactatcatcaatgtgtaaaaagatgaaggtaatggatggggaggaaaataataat |
40235588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University