View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4586_low_50 (Length: 245)
Name: NF4586_low_50
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 41367738 - 41367934
Alignment:
| Q |
10 |
caatgagcttggttacaagcaagaactaagaagagaaatggtttttgttctattgccaacttgatataaattttctcaaacttaaataacnnnnnnnctt |
109 |
Q |
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| T |
41367738 |
caatgagcttggttacaagcaagaactaagaagagaaatggtttttgttctattgccaccttgatataaattttctcaaacttaaataactttttttctt |
41367837 |
T |
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| Q |
110 |
cttcaaatttaatttgttacatttttccatttatcatgaagactatgttcaaaactctcgcgatagcattttcaacaatgacacttttcacggaaat |
206 |
Q |
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| T |
41367838 |
cttcaaatttaatttgttacatttttccatttatcatgaagactatgttcaaaactctcgcgatagcattttcaacaatgacacttttcacggaaat |
41367934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 44281559 - 44281773
Alignment:
| Q |
10 |
caatgagcttggttacaagcaagaactaagaagagaaatggtttttgttctattgccaacttgatataaattttctcaaacttaaa-taacnnnnnnnct |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||||| |||| |||| | |
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| T |
44281559 |
caatgagcttggttacaagcaagaactaagaagagaaatggtttttgttcttttgccatcttgatcaaaaaattctcaaaaataaagtaacattttt--t |
44281656 |
T |
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| Q |
109 |
tcttcaaatttaatttgttacatttttccatttatcatgaagactatgttcaaaactctcgcgatagcattttcaacaatgacacttttcacggaaatca |
208 |
Q |
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| T |
44281657 |
ttttggtactaaatctgttaattttttctatttattgtgcagactatgttcaaaactcttgcgatagcattttcaacaatgacgcttttcactggaatca |
44281756 |
T |
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| Q |
209 |
cacctctatatggttct |
225 |
Q |
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| T |
44281757 |
cgcctctgtatggttct |
44281773 |
T |
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