View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4586_low_52 (Length: 243)
Name: NF4586_low_52
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 1081577 - 1081350
Alignment:
| Q |
4 |
taagaagacttatgccaatcttgacgtgaagaagaaattcatccttcagaggcagaaggaagttgatgaga-----ggacgattttcttataggagcaac |
98 |
Q |
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| T |
1081577 |
taagaagactaatgttgatcttgatgtgaagaagaaattcttccttcagaggcagaaggaagttgatgagatgggaggacgattttcttacaggaggaac |
1081478 |
T |
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| Q |
99 |
aaaagaaaatcagggaagagttaaaacaactagctccagaaactatgcggttagccgaaagcttatggtcgaccaacaaccgaaggagtagtttgtatat |
198 |
Q |
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| T |
1081477 |
aaatgaaaatcagggaagagttagaacaactagctccagaaattatgtggttagccgaaagcttgagatcgaccaataaccgaaggagtagtttgtatat |
1081378 |
T |
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| Q |
199 |
agactccacccgtgttgacactaagttg |
226 |
Q |
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| T |
1081377 |
agactccacccatgttgacattaagttg |
1081350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 2835664 - 2835851
Alignment:
| Q |
21 |
atcttgacgtgaagaagaaattcatccttcagaggcagaaggaagttgatgaga-----ggacgattttcttataggagcaacaaaagaaaatcagggaa |
115 |
Q |
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| T |
2835664 |
atcttgatgtgaagaagaaattcttccttcagtggcaaaaggaagttgatgagatgggaggacgattttcttacaggagcaacaaatgaaaatcagggaa |
2835763 |
T |
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| Q |
116 |
gagttaaaacaactagctccagaaactatgcggttagccgaaagcttatggtcgaccaacaaccgaaggagtagtttgtatatagactc |
204 |
Q |
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| T |
2835764 |
gagttacaacaactagctccagaaactatgcggttagccgaaagcttgaggtcgaccaacaa-cgaaggagtagtttgtatatagactc |
2835851 |
T |
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