View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4586_low_56 (Length: 238)

Name: NF4586_low_56
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4586_low_56
NF4586_low_56
[»] chr5 (2 HSPs)
chr5 (5-171)||(13990454-13990620)
chr5 (168-223)||(13990899-13990954)
[»] chr4 (1 HSPs)
chr4 (168-208)||(38940650-38940690)
[»] chr7 (2 HSPs)
chr7 (168-209)||(5468078-5468119)
chr7 (168-208)||(32676398-32676438)
[»] chr2 (3 HSPs)
chr2 (163-208)||(9740327-9740373)
chr2 (168-198)||(33228199-33228229)
chr2 (168-209)||(38799395-38799436)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 5 - 171
Target Start/End: Original strand, 13990454 - 13990620
Alignment:
Q  5 agtccagtgggggcaagaagggacatttttcacagggctcaacttttttatcctaaatatcttgcatgcatgtatgtcaaatttcaattttatttataga 104  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13990454 agtccagtgggggcaagaagggacatttttcacacggctcaacttttttatcctaaatatcttgcatgcatgtaagtcaaatttcaattttatttataga 13990553  T
Q  105 ttttaaaatttgtctcttaacaataatatataaaagattttgggttgactttttcattctcttaata 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13990554 ttttaaaatttgtctcttaacaataatatataaaagattttgggttgacattttcattctcttaata 13990620  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 13990899 - 13990954
Alignment:
Q  168 aataaatttgtctataaaaatgttatattattgatgtcattgctatattgttggtg 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13990899 aataaatttgtctataaaaatgttatattattgatgtcattgctatgttgttggtg 13990954  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 38940690 - 38940650
Alignment:
Q  168 aataaatttgtctataaaaatgttatattattgatgtcatt 208  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38940690 aataaatttgtctataaaaatgttatattattgatgtcatt 38940650  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 5468078 - 5468119
Alignment:
Q  168 aataaatttgtctataaaaatgttatattattgatgtcattg 209  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  5468078 aataaatttttctataataatgttatattattgatgtcattg 5468119  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 32676398 - 32676438
Alignment:
Q  168 aataaatttgtctataaaaatgttatattattgatgtcatt 208  Q
    |||||| |||||| ||| |||||||||||||||||||||||    
T  32676398 aataaagttgtctctaagaatgttatattattgatgtcatt 32676438  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 9740373 - 9740327
Alignment:
Q  163 ctcttaat-aaatttgtctataaaaatgttatattattgatgtcatt 208  Q
    |||||||| ||||||||||||||||||||| |||| |||||||||||    
T  9740373 ctcttaatcaaatttgtctataaaaatgttgtattcttgatgtcatt 9740327  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 198
Target Start/End: Original strand, 33228199 - 33228229
Alignment:
Q  168 aataaatttgtctataaaaatgttatattat 198  Q
    |||||||||||||||||||||||||||||||    
T  33228199 aataaatttgtctataaaaatgttatattat 33228229  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 38799395 - 38799436
Alignment:
Q  168 aataaatttgtctataaaaatgttatattattgatgtcattg 209  Q
    |||||||||||||||||||||||| |||||||  ||||||||    
T  38799395 aataaatttgtctataaaaatgttttattattagtgtcattg 38799436  T

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