View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4586_low_6 (Length: 540)
Name: NF4586_low_6
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_low_6 |
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| [»] scaffold0027 (2 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 527
Target Start/End: Complemental strand, 16088 - 15596
Alignment:
| Q |
19 |
ataactgtatttctcatgaccgatacagcaccgtacgtaatttttcgtagatgatttgcatttgttttgaaccattatattttaaatcaaagccaatagc |
118 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16088 |
ataactgtatttctcatgaccgatacagcatcggacgtaatttttcgtagatgatttgcatttgttttgaaccactatattttaaatcaaagccaatagc |
15989 |
T |
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| Q |
119 |
ttgtcnnnnnnnnnnngcttttattgtttcacggtacacattaatagtgtcgttcaatgtcgtgattagtaagcattttgatgagaaaagaaaacaagca |
218 |
Q |
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| T |
15988 |
ttgt------------------attgtttcacggtacaaattaatagtgttgttcaatgtcgtgattagtaagcattttgatgagaaaagaaaacaagca |
15907 |
T |
|
| Q |
219 |
ccacattcacacatggtgacatatgagaccaattctaattgaattcttatctatcaataatcaattgcaattattcctttgttccatttcatcacattct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15906 |
ccacattcacacatggtgacatatgagaccaattctaattgaattcttatctatcaataatcaattgcaattattcctttgttccatttcatcacattct |
15807 |
T |
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| Q |
319 |
cacttttagaaccattacattatcataccaacggtataattttgnnnnnnnnaattaatttcttcaatttctctttttaaatcaaatcaacacttgaatt |
418 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15806 |
cacttttagaaccattacattatcataccaacagtacaatttt-atttttttaattaatttcttcaatttctctctttaaatcaaatcaacacttgaatt |
15708 |
T |
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| Q |
419 |
gaatat---attttttatacaatgtgtatgttgatgaattaagtgtgtgttaaaaatctcacatttagatgaaaaagtaaaaatagaacaacacataaat |
515 |
Q |
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| T |
15707 |
gaatatataattttttatacaatgtgtatgttgatgaatcaagtgtgtgttaaaaatctcacatttagatgaaaaagtaaaaattaaacaacacataaat |
15608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 246 - 339
Target Start/End: Complemental strand, 16445 - 16352
Alignment:
| Q |
246 |
accaattctaattgaattcttatctatcaataatcaattgcaattattcctttgttccatttcatcacattctcacttttagaaccattacatt |
339 |
Q |
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||||| |||||||| ||||| ||||||||||||||||||| |||||| | |||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
16445 |
accaactctaattggattctcatctatcaataatcaattgtaattatccatttgttgcatttcatcacattctcacttttagaaccactacatt |
16352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 45610826 - 45610891
Alignment:
| Q |
274 |
aataatcaattgcaattattcctttgttccatttcatcacattctcacttttagaaccattacatt |
339 |
Q |
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| T |
45610826 |
aataatcaattgcaattatccatttattctatttcatcacattctcacttttagaaccattgcatt |
45610891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 21904137 - 21904196
Alignment:
| Q |
187 |
gtaagcattttgatgagaaaagaaaacaagcaccacattcacacatggtgacatatgaga |
246 |
Q |
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| T |
21904137 |
gtaagcatattgatgggaaatggaaacaagaaccacacttacacatggtgacatatgaga |
21904196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 27369611 - 27369670
Alignment:
| Q |
187 |
gtaagcattttgatgagaaaagaaaacaagcaccacattcacacatggtgacatatgaga |
246 |
Q |
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| T |
27369611 |
gtaagtatattgatgagaaatggaaacaagaaccacatttccacatggtgacatatgaga |
27369670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 27459958 - 27460017
Alignment:
| Q |
187 |
gtaagcattttgatgagaaaagaaaacaagcaccacattcacacatggtgacatatgaga |
246 |
Q |
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| T |
27459958 |
gtaagtatattgatgagaaatggaaacaagaaccacatttccacatggtgacatatgaga |
27460017 |
T |
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