View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4586_low_8 (Length: 475)
Name: NF4586_low_8
Description: NF4586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4586_low_8 |
 | |
|
| [»] scaffold0534 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 36386427 - 36386888
Alignment:
| Q |
1 |
cttttattagatatttattcatgcgtcttaatcatgttgtattattcactagaaaattcttcacttcctagctaggtgtcgcatcactggtccattgtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36386427 |
cttttattagatatttattcatgcgtcttaatcatgttgtattattcactagaaaattcttcacttcctagctaggtgtcgcatcactggtccattgtgt |
36386526 |
T |
|
| Q |
101 |
ggaaaatataacagtgaagctgggaattagtgtcttcaacgtctagtgcataagttaggtcaagcgactatgtgcagtttaagagtaaaatttgtgtcat |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36386527 |
ggaaaatataatagtgaagctgggaattagtgtcttcaacgtctagtgcataagttaggacaagcgactatgtgcagtttaagagtaaaatttgtgtcat |
36386626 |
T |
|
| Q |
201 |
tggactatttcaactttctccacatacaaggcaagaaggttctcaaagagaactcaatggactgtgctacaaatcttctctactttgttacaacctaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36386627 |
tggactatttcaactttctccacatacaaggcaagaaggttctcaaagagaactcaatggactgtgctacaaatcttctctactttgttacaacctaaaa |
36386726 |
T |
|
| Q |
301 |
tcataaacacaagttgtcagtgatgcataataattcacttcttaactctttgattctgctccttctcacattctctttttgctcttgttcttctgatacc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36386727 |
tcataaacacaagttgtcagtgatgcataataattcacttcttaactctttgattctgctccttctcacattctctttttgctcttgttcttctgatacc |
36386826 |
T |
|
| Q |
401 |
atatctattcacaaacccctgagagatggtgaacttcttgtttctaaatctaaaacatttgc |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36386827 |
atatctattcacaaacccctgagagatggtgaacttcttgtttctaaatctaaaacatttgc |
36386888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 462
Target Start/End: Original strand, 36396227 - 36396671
Alignment:
| Q |
17 |
attcatgcgtcttaatcatgttgtattattcactagaaaattcttcacttcctagctaggtgtcgc-atcactggtccattgtgtggaaaatataacagt |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
36396227 |
attcatgcttcttaatcatgttgtattattcactagaaaaatcttcacttcctagctaggtgtcgctatcactggtccattgtgtggaaaatataatagt |
36396326 |
T |
|
| Q |
116 |
gaagctgggaattagtgtcttcaacgtctagtgcataagttaggtcaagcgactatgtgcagtttaagagtaaaatttgtgtca-ttggactatttcaac |
214 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
36396327 |
gaagctggaaattagtgtcttcaacgtctagtgcataagttag-tcaagt---tatgttcagtttaagagtgaaatttgtgtcagttggactatttcaac |
36396422 |
T |
|
| Q |
215 |
tttctccacatacaaggcaagaaggttctcaaagag-aactcaatggactgtgctacaaatcttctctactttgttacaacctaaaatcataaacacaag |
313 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||| || ||||| ||||||| ||| |
|
|
| T |
36396423 |
tttctccacatacaagccaagaaggttctcaaagaggaactcaatggactctgctacaaatcatctctactttgttacatcccaaaattataaacaaaag |
36396522 |
T |
|
| Q |
314 |
ttgtcagtgatgcataataattcacttcttaactctttgattctgctccttctcacattctctttttgctcttgttcttctgataccatatctattcaca |
413 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36396523 |
ttgtcagtgatgcataataatttacttcttaactctttgattctactacttctcacattctctttttgctcttgttcttctgataccatatctattgaca |
36396622 |
T |
|
| Q |
414 |
aacccctgagagatggtgaacttcttgtttctaaatctaaaacatttgc |
462 |
Q |
| |
|
|| || | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36396623 |
aaaccttaagagatggtgaacttcttgtttctaaatctaaaacatttgc |
36396671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 365 - 462
Target Start/End: Original strand, 36403507 - 36403604
Alignment:
| Q |
365 |
ctcacattctctttttgctcttgttcttctgataccatatctattcacaaacccctgagagatggtgaacttcttgtttctaaatctaaaacatttgc |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36403507 |
ctcacattctctttttgctcttgttcttctgataccatatctatcgacaaaaccttaagagatggtgaacttcttgtttctaaatctaaaacctttgc |
36403604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 345 - 462
Target Start/End: Original strand, 36410804 - 36410921
Alignment:
| Q |
345 |
actctttgattctgctccttctcacattctctttttgctcttgttcttctgataccatatctattcacaaacccctgagagatggtgaacttcttgtttc |
444 |
Q |
| |
|
||||||||||||| || |||||| || ||||||||| |||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
36410804 |
actctttgattctactatgtctcaccttatctttttgcccttgttcttctgataccataactattcacaaacccataagagatggtgaacttctcatttc |
36410903 |
T |
|
| Q |
445 |
taaatctaaaacatttgc |
462 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
36410904 |
taaatctaaaacatttgc |
36410921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 345 - 462
Target Start/End: Original strand, 36416135 - 36416252
Alignment:
| Q |
345 |
actctttgattctgctccttctcacattctctttttgctcttgttcttctgataccatatctattcacaaacccctgagagatggtgaacttcttgtttc |
444 |
Q |
| |
|
||||||||||||| || |||||| || ||||||||| |||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
36416135 |
actctttgattctactatgtctcaccttatctttttgcccttgttcttctgataccataactattcacaaacccataagagatggtgaacttctcatttc |
36416234 |
T |
|
| Q |
445 |
taaatctaaaacatttgc |
462 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
36416235 |
taaatctaaaacatttgc |
36416252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 345 - 462
Target Start/End: Original strand, 36424970 - 36425087
Alignment:
| Q |
345 |
actctttgattctgctccttctcacattctctttttgctcttgttcttctgataccatatctattcacaaacccctgagagatggtgaacttcttgtttc |
444 |
Q |
| |
|
||||||||||||| || |||||| || ||||||||| |||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
36424970 |
actctttgattctactatgtctcaccttatctttttgcccttgttcttctgataccataactattcacaaacccataagagatggtgaacttctcatttc |
36425069 |
T |
|
| Q |
445 |
taaatctaaaacatttgc |
462 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
36425070 |
taaatctaaaacatttgc |
36425087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 181 - 462
Target Start/End: Original strand, 36372649 - 36372932
Alignment:
| Q |
181 |
aagagtaaaatttgtgtca-ttggactatttcaactttctccacatacaaggcaagaaggttctcaaagag-aactcaatggactgtgctacaaatcttc |
278 |
Q |
| |
|
||||||| ||||| ||||| ||||| ||||||| |||||| |||| || |||||| || ||| |||||| ||| ||||||||| ||||| |||| || |
|
|
| T |
36372649 |
aagagtacaatttatgtcagttggagtatttcacttttctcttcataaaatgcaagaggggtctgaaagagtaacacaatggactctgctaaaaatattt |
36372748 |
T |
|
| Q |
279 |
tctactttgttacaacctaaaatcataaacacaagttgtcagtgatgcataataattcacttctta---actctttgattctgctccttctcacattctc |
375 |
Q |
| |
|
|||||||||| ||| || ||||||||||||||||||| | | || ||||||| || | |||| ||||||||||||| ||||||| || ||||| |
|
|
| T |
36372749 |
tctactttgtcacagccaaaaatcataaacacaagtt---aataatacataatagttggttccttataaactctttgattctactccttccgaccttctc |
36372845 |
T |
|
| Q |
376 |
tttttgctcttgttcttctgataccatatctattcacaaacccctgagagatggtgaacttcttgtttctaaatctaaaacatttgc |
462 |
Q |
| |
|
||||||||||||||| |||||| |||||||| | ||||||| | ||||||||||| ||||||||||| ||||| ||||| ||||| |
|
|
| T |
36372846 |
cttttgctcttgttctactgatatcatatctactgacaaaccaataagagatggtgagcttcttgtttccaaatccaaaacttttgc |
36372932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 346 - 455
Target Start/End: Original strand, 36432831 - 36432937
Alignment:
| Q |
346 |
ctctttgattctgctccttctcacattctctttttgctcttgttcttctgataccatatctattcacaaacccctgagagatggtgaacttcttgtttct |
445 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||||||||||||||||||| ||||||| | |||||| | ||||||||||| ||||| ||||| |
|
|
| T |
36432831 |
ctctttgattctactacttctcac---ctctttttgctcttgttcttctgatactatatctactgtcaaaccattaagagatggtgagcttctgatttct |
36432927 |
T |
|
| Q |
446 |
aaatctaaaa |
455 |
Q |
| |
|
|||||||||| |
|
|
| T |
36432928 |
aaatctaaaa |
36432937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 462
Target Start/End: Original strand, 36368098 - 36368316
Alignment:
| Q |
250 |
gaactcaatggactgtgctacaaatcttctctactttgttacaacctaaaatcataaacacaagttgtcagtgatgca------taataattcacttctt |
343 |
Q |
| |
|
||||| |||||||| ||||| | || ||||||| |||| |||||| ||||||||||||||||||||| | | | || |||||||| || ||| |
|
|
| T |
36368098 |
gaacttaatggactctgctaaagctcatctctaccttgtcacaacccaaaatcataaacacaagttgttattattacataatactaataattggctactt |
36368197 |
T |
|
| Q |
344 |
aactctttgattctgctccttctcacattctctttttgctcttgttcttctgataccatatctattcacaaacccctgagagatggtgaacttcttgttt |
443 |
Q |
| |
|
|| | ||||||||| |||||||| | || |||||||| || ||||||||||||| ||||||| | | | || | | ||||||||||| ||||| | | |
|
|
| T |
36368198 |
aattatttgattctactccttcttgccttttctttttgttcctgttcttctgatatcatatcttctgatacacgcataagagatggtgagattcttatat |
36368297 |
T |
|
| Q |
444 |
ctaaatctaaaacatttgc |
462 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
36368298 |
ctaaatctaaaacatttgc |
36368316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 343 - 409
Target Start/End: Complemental strand, 11111 - 11045
Alignment:
| Q |
343 |
taactctttgattctgctccttctcacattctctttttgctcttgttcttctgataccatatctatt |
409 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11111 |
taactctttgattctactacttctcagcttctctttttgctcttgttcttctgataccatatctatt |
11045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 343 - 409
Target Start/End: Original strand, 42772615 - 42772681
Alignment:
| Q |
343 |
taactctttgattctgctccttctcacattctctttttgctcttgttcttctgataccatatctatt |
409 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42772615 |
taactctttgattctactacttctcagcttctctttttgctcttgttcttctgataccatatctatt |
42772681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 42772537 - 42772609
Alignment:
| Q |
250 |
gaactcaatggactgtgctacaaatcttctctactttgttacaacctaaaatcataaacacaagttgtcagtg |
322 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||||| |||| |||| | ||||||||||||||||||||| |||| |
|
|
| T |
42772537 |
gaactcaatggactctgctaaaaaatttctctaccttgtcacaatccaaaatcataaacacaagttgttagtg |
42772609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University