View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4587-Insertion-1 (Length: 1050)
Name: NF4587-Insertion-1
Description: NF4587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4587-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 863; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 863; E-Value: 0
Query Start/End: Original strand, 30 - 947
Target Start/End: Complemental strand, 35197418 - 35196499
Alignment:
| Q |
30 |
gagatacattgaaatttgatggattctaaataggcacggtagaaggggaagcaaaagttggccactagtttacaatgttcgagagggggtacaagttttt |
129 |
Q |
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| T |
35197418 |
gagatacattgaaatttgatggattctaaataggcacggtagaaggggaagcaaaagttggccactagtttacaatgttcgagagggggtacaagttttt |
35197319 |
T |
|
| Q |
130 |
tgagtagagggagctgtccatttggttggtgagggtggactcctttatataattgtggtcctccttaaccgccttaattgcggtaaatagggcggccttc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35197318 |
tgagtagagggagctgtccatttggttggtgagggtggactcctttatataattgtggtcctccttaaccgccttaattgcggtaaatagggcggccttc |
35197219 |
T |
|
| Q |
230 |
attgtaggctccaacaccattgtgttgtccgtaaagaagtgggtttagtctcatatccttgagatatggaatttgtagtgcttataagtccaaaattagt |
329 |
Q |
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| T |
35197218 |
attgtaggctccaacaccattgtgttgtctgtaaagaagtgggtttagtctcatatccttgagatatggaatttgtagtgcttataagtccaaaattagt |
35197119 |
T |
|
| Q |
330 |
gatggtatcgttgtcgagagtcccgcaatgaatgtgatatgaccccaaaagtatttataagtggtgggcttcccttaccatacaagtcaattttgtcagc |
429 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35197118 |
gatggtatcgctgtcgagagtcccgcaatgaatgtgatatgaccccaaaagtatttataagtggtgggcttcccttaccatacaagtcaattttgtcagc |
35197019 |
T |
|
| Q |
430 |
atccgttactatacaaatctgttggaccacctattatcaaaccacttggatcacacttcaaatgttcgccattggacgtgagaagggtgtgcttgagagt |
529 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35197018 |
atccgttactatacaaatctgttggaccacctattatcaaaccacttggatcacacttcaaatgttcaccattggacgtgagaagggtgtgcttgagagt |
35196919 |
T |
|
| Q |
530 |
cccatattagatatgatatggaaatctgtttataagtgacggatatctctcatcttacaagtcgggtttagaaggttgaattagacccaacctatatttt |
629 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35196918 |
cccatattagatatgatatgaaaatctgtttataagtgacggatatctctcatcttacaagtcgggtttagaaggttgaattagacccaacctatatttt |
35196819 |
T |
|
| Q |
630 |
aaggtatattgtggcaattgtctaataatgatctttagttgcctcataacctagtgtcggaaatcttcttgattttacttggacattatgttatcctttg |
729 |
Q |
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| T |
35196818 |
aaggtatattgtggcaattgtctaataatgatctttagttgcctcataacctagtgtcggaaatcttcttgattttacttggacattatgttatcctttg |
35196719 |
T |
|
| Q |
730 |
acctgaggtccattatctaatatcagtgccaatatcctattttggctgtctaaaagtnnnnnnnccaaaatactctgcgtttacgcctaaatctttgtgg |
829 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35196718 |
acctgaggtccattatctaatatcagtgccaatatcctattttggctgtctaaaagtaaaaaaaccaaaatactctgcgtttacgcctaaatctttgtgg |
35196619 |
T |
|
| Q |
830 |
ctaaggtgaaatccagctgtggatcttagtaccgctccaaaactatacaccgccacccccttgtaagcgg-agactgtttccatggctataat-catgat |
927 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
35196618 |
ctaaggtgaaatccagctgtggatcttagtaccgctccaaaactatacaccgccacacccttgtaagcggaagactgtttccatggctataatccatgat |
35196519 |
T |
|
| Q |
928 |
caccatgtaacaaaatagca |
947 |
Q |
| |
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|||||||||||||||||||| |
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| T |
35196518 |
caccatgtaacaaaatagca |
35196499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 574 - 632
Target Start/End: Complemental strand, 30014215 - 30014157
Alignment:
| Q |
574 |
atctctcatcttacaagtcgggtttagaaggttgaattagacccaacctatattttaag |
632 |
Q |
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||||||||||||||||||||| ||| | |||||| |||||||||||||| |||||||| |
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| T |
30014215 |
atctctcatcttacaagtcggttttgtagggttgagttagacccaacctaaattttaag |
30014157 |
T |
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