View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4587-Insertion-2 (Length: 794)
Name: NF4587-Insertion-2
Description: NF4587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4587-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 7 - 462
Target Start/End: Original strand, 52477948 - 52478394
Alignment:
| Q |
7 |
agttttgcatcctcacaatattcacgtgagatatatatggtatagaagaaagtcatgatatatatggccgaccagcactaaattaaaatttgaaacatga |
106 |
Q |
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| T |
52477948 |
agttttgcatcctcacaatattcacgtgagatat----ggtatagaagaaagtcatgatatatatggccgaccagcactaaattaaaatttgaaacatga |
52478043 |
T |
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| Q |
107 |
agttccactttgaaatagaagtgggagaatgcgtaagcccttgtcaagatatttgataacttgtccaatcatgcttcataatcataattcatacattatt |
206 |
Q |
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| T |
52478044 |
agttccactttgaaatagaagtgggagaatgcgtaagcccttgtcaagatatttgataacttgtccaatcatgcttcataatcataattcatacatt--- |
52478140 |
T |
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| Q |
207 |
aattaacgatcaaattaacattagatagtcatggtcatgagtgacgccatgccattgttgacggcctattagcaactggtctagaactgttgttattctc |
306 |
Q |
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| T |
52478141 |
-attaacgatcaaattaacattagatagtcatggtcatgagtgacgccatgccattgttgacggcctattagcaactggtctagaactgttgttattctc |
52478239 |
T |
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| Q |
307 |
agtggacatttacaccatcactttaccgttttttatttgtataagttaattataacggtgatcttttttaatattgtcggttctcaagtcatcatggctt |
406 |
Q |
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| T |
52478240 |
agtggacatttacaccatcactttacc-tttattatttgtataagtaaattataacggtgatcttttttaatattgtcggttctcaagtcatcatggctt |
52478338 |
T |
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| Q |
407 |
tattagagatgttacccacggttcaatttgcttcttggtgggtgcctcattgtata |
462 |
Q |
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| T |
52478339 |
tattagagatgttacccacggttcaatttgcttcttggtgggtgcctcattgtata |
52478394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 459 - 793
Target Start/End: Original strand, 52478421 - 52478774
Alignment:
| Q |
459 |
tatatggtatcaatgcccaagttctcagttggatttttatgtgtacttaacatcattcaactgtggtaatcgtcaaatgattt----------------- |
541 |
Q |
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| T |
52478421 |
tatatggtatcaatgcccaagttctcagttggatttttatgtgtacttaacatcattcaactgtggtaatcgtcaaatgttttcacaaacttgatgacaa |
52478520 |
T |
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| Q |
542 |
---agcataaatgaggcttcctttgtcaaccgagtatggtagtgggatgatggtaacatttatatagtaatagtaataactagaactaacaaatcttata |
638 |
Q |
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| T |
52478521 |
tatagcatacattaggcttcctttgtgaaccgagtatggtagtgggatgatggtaacatttatatagtaatagtaataactagaactaacaaatcttata |
52478620 |
T |
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| Q |
639 |
actagaactaatgttattgttttaatttaagcgggacttatatttacttttttaacttgtatggttgtgctttagtgtttatgagtgtcagagaaagcga |
738 |
Q |
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| T |
52478621 |
actagaactaatgttcttgttttaatttaagtgggacttatatttac-tttttaacttgtat-gttgtgctttagtgtttatgagtgtcagagaaagcga |
52478718 |
T |
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| Q |
739 |
tcaatggagttgctcacactaaattttttc-atttagtgtaccttacaaaaaattt |
793 |
Q |
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| T |
52478719 |
tcgatggagttgctcacactaaattttttcaatttagtgtaccttacaaaaaattt |
52478774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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