View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4587-Insertion-3 (Length: 567)

Name: NF4587-Insertion-3
Description: NF4587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4587-Insertion-3
NF4587-Insertion-3
[»] chr7 (12 HSPs)
chr7 (286-467)||(32089334-32089515)
chr7 (304-467)||(32087979-32088142)
chr7 (7-116)||(32089516-32089625)
chr7 (470-567)||(32088631-32088728)
chr7 (326-467)||(32093091-32093232)
chr7 (94-217)||(32095354-32095477)
chr7 (370-467)||(32096807-32096904)
chr7 (7-56)||(32095476-32095525)
chr7 (304-440)||(32095035-32095174)
chr7 (260-303)||(32088252-32088295)
chr7 (435-467)||(41812156-41812188)
chr7 (437-467)||(41706698-41706728)
[»] chr8 (1 HSPs)
chr8 (434-467)||(21634875-21634908)
[»] chr3 (4 HSPs)
chr3 (435-467)||(48837982-48838014)
chr3 (436-467)||(38044590-38044621)
chr3 (439-467)||(147941-147969)
chr3 (415-467)||(50916227-50916279)
[»] chr6 (1 HSPs)
chr6 (436-467)||(26217303-26217334)
[»] chr1 (1 HSPs)
chr1 (438-467)||(31142017-31142046)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 286 - 467
Target Start/End: Complemental strand, 32089515 - 32089334
Alignment:
Q  286 gatatccgttatagtgatatctgaatcgcttgcttgcctcaggtgaaggttgagaaggatttgcatgttactgttacacttgctttttagtcccacattg 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  32089515 gatatccgttatagtgatatctgaatcgcttgcttgcctcaggtgaaagttgagaaggatttgcatgtaactgttacacttgctttttagtcccacatcg 32089416  T
Q  386 actgaaatagaaaatattttggcgtttatatagagcaagcaaaccataaggcttgtcccttcggggacatccgataaaattg 467  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32089415 actgaaatagaaaatattttggcgtatatatagagcaagcaaaccataaggcttgtcccttcggggacatccgataaaattg 32089334  T

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Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 304 - 467
Target Start/End: Complemental strand, 32088142 - 32087979
Alignment:
Q  304 atctgaatcgcttgcttgcctcaggtgaaggttgagaaggatttgcatgttactgttacacttgctttttagtcccacattgactgaaatagaaaatatt 403  Q
    |||||| |||||||||||| ||||||||| |||||||||||| ||||| ||||| |||||||||| |||||||||||||| | |||||| ||||||||||    
T  32088142 atctgagtcgcttgcttgcttcaggtgaaagttgagaaggatatgcatattactattacacttgccttttagtcccacatcggctgaaacagaaaatatt 32088043  T
Q  404 ttggcgtttatatagagcaagcaaaccataaggcttgtcccttcggggacatccgataaaattg 467  Q
    || || |||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||    
T  32088042 ttagcatttatatagagcaagcgaaccgtaaggcttgtcccttcggggacatctgataaaattg 32087979  T

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Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 32089625 - 32089516
Alignment:
Q  7 aagggacactccagctttagtttaaatagaggatcacactcttgtatcctgtgtggcaaagcaacataaatcctttcccttaacatactttggctctctt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32089625 aagggacactccagctttagtttaaatagaggatcacactcttgtatcctgtgtggcaaagcaacataaaccctttcccttaacatactttggctctctt 32089526  T
Q  107 tatagaaatc 116  Q
    ||||| ||||    
T  32089525 tataggaatc 32089516  T

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Target: chr7; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 470 - 567
Target Start/End: Complemental strand, 32088728 - 32088631
Alignment:
Q  470 accatcaggttcacctactttccattctttgctgaaagtattgggtttcttggcgtctggttttgtccaactagaagaattttatttccaggattata 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32088728 accatcaggttcacctactttccattctttgctgaaagtattgggtttcttggcgtctggttttgtccaactagaagaattttatttccaggattata 32088631  T

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Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 326 - 467
Target Start/End: Complemental strand, 32093232 - 32093091
Alignment:
Q  326 aggtgaaggttgagaaggatttgcatgttactgttacacttgctttttagtcccacattgactgaaatagaaaatattttggcgtttatatagagcaagc 425  Q
    ||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| |||||||||||  ||||||| |||   |||||    
T  32093232 aggtgaaagtcgagaaggatttgcatgttactattacacttgctttttagtcccacatcgtctgaaacagaaaatatttcagcgtttaaatacttcaagc 32093133  T
Q  426 aaaccataaggcttgtcccttcggggacatccgataaaattg 467  Q
     |||||  ||||||||||||||||||||||||||||||||||    
T  32093132 gaaccagtaggcttgtcccttcggggacatccgataaaattg 32093091  T

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Target: chr7; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 94 - 217
Target Start/End: Complemental strand, 32095477 - 32095354
Alignment:
Q  94 ctttggctctctttatagaaatcttgctgtctggagaccatgctttcacgttgttaattaatttactccgtttgatgaatctctgaattgcatctttctc 193  Q
    |||||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| || || |||||||| ||||||||||||||||||     
T  32095477 ctttggttctctttatagaaatcttgctgtgtagaggccatgctttcacgttgttaattaatttattctgtctgatgaatatctgaattgcatctttctg 32095378  T
Q  194 ttgaaataaaaatttgtgcgaaat 217  Q
    ||||| |||| |||| || |||||    
T  32095377 ttgaattaaagatttctgtgaaat 32095354  T

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Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 370 - 467
Target Start/End: Complemental strand, 32096904 - 32096807
Alignment:
Q  370 ttttagtcccacattgactgaaatagaaaatattttggcgtttatatagagcaagcaaaccataaggcttgtcccttcggggacatccgataaaattg 467  Q
    |||||||||||||| |||||||| ||||||||| | ||||||||||||  |||||| |||||||| | ||||||||||||||||||||||||||||||    
T  32096904 ttttagtcccacatcgactgaaacagaaaatatctaggcgtttatatactgcaagcgaaccataatgtttgtcccttcggggacatccgataaaattg 32096807  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 32095525 - 32095476
Alignment:
Q  7 aagggacactccagctttagtttaaatagaggatcacactcttgtatcct 56  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  32095525 aagggactctccagctttagtataaatagaggatcacactcttgtatcct 32095476  T

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Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 440
Target Start/End: Complemental strand, 32095174 - 32095035
Alignment:
Q  304 atctgaatcgcttgcttgcctcaggtgaaggttgagaaggatttgcatgttac---tgttacacttgctttttagtcccacattgactgaaatagaaaat 400  Q
    |||||| |||||||||||| ||||||| | |||||| ||||| ||||||||||   | ||| ||||||||||||||| ||||| |||||| | | |||||    
T  32095174 atctgagtcgcttgcttgcttcaggtgtaagttgaggaggatgtgcatgttactattattatacttgctttttagtcacacatcgactgacacaaaaaat 32095075  T
Q  401 attttggcgtttatatagagcaagcaaaccataaggcttg 440  Q
    || |   || |||||||  |||||| ||||| ||||||||    
T  32095074 atctcaacgattatatactgcaagcgaaccaaaaggcttg 32095035  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 32088295 - 32088252
Alignment:
Q  260 gtgtggttacttgacaacaggaaattgatatccgttatagtgat 303  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||    
T  32088295 gtgtggttacttgacaacagggaatcgatatccgttatagtgat 32088252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 467
Target Start/End: Original strand, 41812156 - 41812188
Alignment:
Q  435 ggcttgtcccttcggggacatccgataaaattg 467  Q
    |||||||||||||||||||||||||||||||||    
T  41812156 ggcttgtcccttcggggacatccgataaaattg 41812188  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 467
Target Start/End: Complemental strand, 41706728 - 41706698
Alignment:
Q  437 cttgtcccttcggggacatccgataaaattg 467  Q
    |||||||||||||||||||||||||||||||    
T  41706728 cttgtcccttcggggacatccgataaaattg 41706698  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 434 - 467
Target Start/End: Complemental strand, 21634908 - 21634875
Alignment:
Q  434 aggcttgtcccttcggggacatccgataaaattg 467  Q
    ||||||||||||||||||||||||||||||||||    
T  21634908 aggcttgtcccttcggggacatccgataaaattg 21634875  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 467
Target Start/End: Original strand, 48837982 - 48838014
Alignment:
Q  435 ggcttgtcccttcggggacatccgataaaattg 467  Q
    |||||||||||||||||||||||||||||||||    
T  48837982 ggcttgtcccttcggggacatccgataaaattg 48838014  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 467
Target Start/End: Complemental strand, 38044621 - 38044590
Alignment:
Q  436 gcttgtcccttcggggacatccgataaaattg 467  Q
    ||||||||||||||||||||||||||||||||    
T  38044621 gcttgtcccttcggggacatccgataaaattg 38044590  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 467
Target Start/End: Original strand, 147941 - 147969
Alignment:
Q  439 tgtcccttcggggacatccgataaaattg 467  Q
    |||||||||||||||||||||||||||||    
T  147941 tgtcccttcggggacatccgataaaattg 147969  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 467
Target Start/End: Complemental strand, 50916279 - 50916227
Alignment:
Q  415 atagagcaagcaaaccataaggcttgtcccttcggggacatccgataaaattg 467  Q
    ||||| || |||||| | |||||||||||||| ||| ||||||||||||||||    
T  50916279 atagaacaggcaaacaacaaggcttgtccctttgggaacatccgataaaattg 50916227  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 467
Target Start/End: Complemental strand, 26217334 - 26217303
Alignment:
Q  436 gcttgtcccttcggggacatccgataaaattg 467  Q
    ||||||||||||||||||||||||||||||||    
T  26217334 gcttgtcccttcggggacatccgataaaattg 26217303  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 467
Target Start/End: Complemental strand, 31142046 - 31142017
Alignment:
Q  438 ttgtcccttcggggacatccgataaaattg 467  Q
    ||||||||||||||||||||||||||||||    
T  31142046 ttgtcccttcggggacatccgataaaattg 31142017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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