View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4587_high_2 (Length: 383)
Name: NF4587_high_2
Description: NF4587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4587_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 21 - 378
Target Start/End: Complemental strand, 20531839 - 20531482
Alignment:
| Q |
21 |
atagttttgagcacaatcctatccaaaaacctatttcattctcacctcctttttccaccacgtcactaaattcatctccttcatctattgtttcaccagc |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20531839 |
atagttttgagcacaatcctatccaaaaacctatttcattctcacctcctttttccaccacgtcactaaattcatctccttcatctattgtttcaccagc |
20531740 |
T |
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| Q |
121 |
ttctgaattttccaaacaatcattaatggaagctgccactgcaatttctgaaggcaaaatggattatgctaaggagatcctctctagtttctcacataca |
220 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20531739 |
ttctgagttttccaaacaatcattaatggaagctgccactgcaatttctgaaggcaaaatggattatgctaaggagatcctctctagtttctcacataca |
20531640 |
T |
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| Q |
221 |
caaaacccaaaactaaaatttgacagttggttattggattgcattgcttcagcgctgaaatcgcgtgtgaataacattgaaaatccacctccagttgcag |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20531639 |
caaaacccaaaactaaaatttgacagttggttattggattgcattgcttcagcgctgaaatcgcgtgtgaataacattgaaaatccacctccagttgcag |
20531540 |
T |
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| Q |
321 |
aattgttcagcaaagaacacactgattcaactcagcttctgtttgataactccctttg |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20531539 |
aattgttcagcaaagaacacactgattcaactcagcttctgtttgataactctctttg |
20531482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 21 - 382
Target Start/End: Complemental strand, 28297191 - 28296830
Alignment:
| Q |
21 |
atagttttgagcacaatcctatccaaaaacctatttcattctcacctcctttttccaccacgtcactaaattcatctccttcatctattgtttcaccagc |
120 |
Q |
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||||||| ||||| ||||||||||| |||||| ||||||| |||||| | |||| |||| | ||| |||||||||||||||||||||||||||| || |
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| T |
28297191 |
atagtttcgagcaaaatcctatccagaaacctgtttcattttcacctacctttttagccacattgctatattcatctccttcatctattgtttcacctgc |
28297092 |
T |
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| Q |
121 |
ttctgaattttccaaacaatcattaatggaagctgccactgcaatttctgaaggcaaaatggattatgctaaggagatcctctctagtttctcacataca |
220 |
Q |
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|||||| ||||||||||||| ||||||||| |||||| ||| |||||||||||||||||| | ||||| ||||||||||||||| ||||||| || ||| |
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| T |
28297091 |
ttctgagttttccaaacaattgttaatggaaactgccattgcgatttctgaaggcaaaatgaaatatgcgaaggagatcctctctcgtttctctcaaaca |
28296992 |
T |
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| Q |
221 |
caaaacccaaaactaaaatttgacagttggttattggattgcattgcttcagcgctgaaatcgcgtgtgaataacattgaaaatccacctccagttgcag |
320 |
Q |
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|||||| ||||||| |||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| || | | |
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| T |
28296991 |
caaaactcaaaactgaaatttgatcgttggttattggattgcatggcttcaacgctgaaatcgcgtgtgaataacattgaaaatccacctcctgtagtgg |
28296892 |
T |
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| Q |
321 |
aattgttcagcaaagaacacactgattcaactcagcttctgtttgataactccctttgcttc |
382 |
Q |
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||||||||||||||||||| |||| || ||||| ||||| ||||| |||| ||||||||| |
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| T |
28296891 |
aattgttcagcaaagaacatgctgagtcgactcaccttctccttgatcactctctttgcttc |
28296830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 25 - 382
Target Start/End: Original strand, 28295573 - 28295930
Alignment:
| Q |
25 |
ttttgagcacaatcctatccaaaaacctatttcattctcacctcctttttccaccacgtcactaaattcatctccttcatctattgtttcaccagcttct |
124 |
Q |
| |
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||||||| | || |||||||| |||||| |||||| ||||| | |||||| | || || |||||||||||||||||||||||||||||||| |||| | |
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| T |
28295573 |
ttttgagaaaaaccctatccataaacctgtttcatcctcacatactttttatgcaacatcgctaaattcatctccttcatctattgtttcacctgcttat |
28295672 |
T |
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| Q |
125 |
gaattttccaaacaatcattaatggaagctgccactgcaatttctgaaggcaaaatggattatgctaaggagatcctctctagtttctcacatacacaaa |
224 |
Q |
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|| |||||||||||||| |||||||| | |||||| | ||||||| ||| |||||||| ||||| ||||||||||| ||| |||||| || ||||||| |
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| T |
28295673 |
gagttttccaaacaatcgttaatggatgttgccaccacgatttctggaggaaaaatggaatatgcgaaggagatcctttctcctttctctcaaacacaaa |
28295772 |
T |
|
| Q |
225 |
acccaaaactaaaatttgacagttggttattggattgcattgcttcagcgctgaaatcgcgtgtgaataacattgaaaatccacctccagttgcagaatt |
324 |
Q |
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|||||||||| || ||||| |||||||||| |||||||| |||| |||||| ||||||||| || ||||||||||||||||||||||| | ||||| |
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| T |
28295773 |
acccaaaactgaattttgatcgttggttattagattgcatggctttagcgcttaaatcgcgtatggataacattgaaaatccacctccaataatggaatt |
28295872 |
T |
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| Q |
325 |
gttcagcaaagaacacactgattcaactcagcttctgtttgataactccctttgcttc |
382 |
Q |
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||| ||||||||||| ||| || ||||| ||||| ||||| |||| ||||||||| |
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| T |
28295873 |
gtttagcaaagaacatgttgagtcgactcaccttctccttgatcactctctttgcttc |
28295930 |
T |
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