View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4587_low_1 (Length: 616)
Name: NF4587_low_1
Description: NF4587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4587_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 196 - 538
Target Start/End: Original strand, 23509605 - 23509947
Alignment:
| Q |
196 |
tttttccttaagagatagagaaaggtgactaggtcatgtcagagtcatttccctaaattgtttgattgactacaaactatggatacagtgttgacatatt |
295 |
Q |
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| T |
23509605 |
tttttccttaagagatagagaaaggtgactaggtcatgtcagagtcatttccctaaattgtttgattgaccgcaaactatggatacagtgttgacatatt |
23509704 |
T |
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| Q |
296 |
gcttggcttaataatatttgataaataaaaatggttaggccaattccttgacattaactctctttaatgttcatactccctaatgtcttaagtgagttga |
395 |
Q |
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| T |
23509705 |
gcttggcttaataatatttgataaataaaaatggttaggccaattccttgacattaactctcttcaatgttcatactccctaatgtcttaagtgagttga |
23509804 |
T |
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| Q |
396 |
agactgatgaaggttttagaacgccaaatttaatacaatattatacctaaaatatgtctacactggaaaacaatcaaacaaatcatactcttatattttt |
495 |
Q |
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| T |
23509805 |
agacagatgaaggttttgaaacgccaaatttaatacaatattatacataaaatatgtctacactggaaaacaatcaaacaaatcatactcttatattttt |
23509904 |
T |
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| Q |
496 |
tatggtctagggttagtagaccttgatttttcatctattcgtg |
538 |
Q |
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| T |
23509905 |
tatggtctagggttagtagaccttgatttttcattgattcgtg |
23509947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 23508960 - 23509143
Alignment:
| Q |
12 |
atgaaagtacccttccaactaaatagtaacaatctcttggaatgtcgcatatgtgaacttctaaataatttgtaattaattttg--------tnnnnnnn |
103 |
Q |
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| T |
23508960 |
atgaaagtacccttccaactaaataataacaatctcttggaatgtcgcatatgtgaacttctaaataatttgtaattaattttgtaaaaaaataaataaa |
23509059 |
T |
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| Q |
104 |
nnnnttgtaattgttgattgtataattcaaactttagatcaagagaattctgtacctttgaggatgatgaaccacagaggtcac |
187 |
Q |
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| T |
23509060 |
aaaattgtaattgttgattgtataattcaaactttagatcaagagaattatgtatctcagaggatgatgaaccacggaggtcac |
23509143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 212 - 489
Target Start/End: Complemental strand, 22783833 - 22783559
Alignment:
| Q |
212 |
agagaaaggtgactaggtcatgtcagagtcatttccctaaattgtttgattgactacaaactatggatacagtgttgacatattgcttggcttaataata |
311 |
Q |
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| T |
22783833 |
agagaaaggcgactaggtcatgttagagttacttccctaaattgcttgagtaattgcaaactatggatatagtattgacggatagctcggttttatgata |
22783734 |
T |
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| Q |
312 |
tttgataaataaaaatggttaggccaat-tccttgacattaactctctttaatgttcatactccctaatgtcttaagtgagt-tgaagactgatgaaggt |
409 |
Q |
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| T |
22783733 |
tttgat-----caaatggttaggtcaatctcttggtcactaaatctcttcaatggtcatactccctaatgtcttaggtgagtgtcatgaccattgtaggt |
22783639 |
T |
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| Q |
410 |
tttagaacgccaaatttaatacaatattatacctaaaatatgtctacactggaaaacaatcaaacaaatcatactcttat |
489 |
Q |
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|||||||| |||||||||||||| ||||| |||| |||||||||| || | ||||||| ||||| | |||||||||| |
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| T |
22783638 |
tttagaacaccaaatttaatacacaattattcctataatatgtctatgctaggcaacaatcgaacaatttatactcttat |
22783559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 535
Target Start/End: Original strand, 4453622 - 4453750
Alignment:
| Q |
405 |
aaggttttagaacgccaaatttaatacaatattatacctaaaatatgtctacactggaaaacaatcaaacaaatcatactcttatattttttatggtcta |
504 |
Q |
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| T |
4453622 |
aaggttttagaacgtcaaatttaatacataattattcctagaatatgt-tactccaggaaacaatc-aacaaattatactcttattcttattcaaggcta |
4453719 |
T |
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| Q |
505 |
gggttagtagaccttgatttttcatctattc |
535 |
Q |
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| T |
4453720 |
gggttaatagacattgattttgcatcaattc |
4453750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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