View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4587_low_2 (Length: 444)
Name: NF4587_low_2
Description: NF4587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4587_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 52477529 - 52477953
Alignment:
| Q |
1 |
tgcgttttgttttgaagatgcaattgtgactagaagtgataaggaacataagttccaaggacaaaaccagcatgagagtcagagtcaaaaataaatcaag |
100 |
Q |
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| T |
52477529 |
tgcgttttgttttgaagatgcaattgtgactagaagtgataaggaacataagttccaaggacaaaaccagcatgagagtcag--tcaaaaataaatcaag |
52477626 |
T |
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| Q |
101 |
tgaaataacggatttggttaccggaggcggcgaagtcggacaaattcatagacacctttggtactgttgatggcagccatgaagtgcagtgtctctccta |
200 |
Q |
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| T |
52477627 |
tgaaataacggatttggttaccggaggcggcgaagtcggacaaattcatagacacctttggtactgttgatggcagccatgaagtgcagtgtctctccta |
52477726 |
T |
|
| Q |
201 |
tgaagggtaatcctcgatttcccggaggaatgccaacactacaactgcacttgttgtttttgcaccaaagtgcacacacttttaaagatgataaaaacac |
300 |
Q |
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| T |
52477727 |
tgaagggtaatcctcgatttcccggaggaatgccaacactacgactgcacttgttgtttttgcaccaaagtgcacacacttttaaagatgataaaaacac |
52477826 |
T |
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| Q |
301 |
caataagaaaccaacaaagtaaggatgttcttttactaattgggaaagcattttgattcatctgcttctttgaaaccacctaagtgcnnnnnnnnnnnna |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
52477827 |
caataagaaaccaacaaagtaaggatgttcttttactaattgggaaagcattttgattcatctgcttctttgaaaccacctaagtgctatatatatataa |
52477926 |
T |
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| Q |
401 |
gcaagtatacaacattaaagtagtttt |
427 |
Q |
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| T |
52477927 |
gcaagtatacaacattaaagtagtttt |
52477953 |
T |
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