View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4588-Insertion-10 (Length: 76)

Name: NF4588-Insertion-10
Description: NF4588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4588-Insertion-10
NF4588-Insertion-10
[»] chr8 (2 HSPs)
chr8 (8-72)||(43653858-43653922)
chr8 (8-72)||(43658677-43658741)
[»] chr1 (3 HSPs)
chr1 (8-72)||(13016661-13016725)
chr1 (20-72)||(291113-291165)
chr1 (20-64)||(36616534-36616578)
[»] chr2 (2 HSPs)
chr2 (20-65)||(8363026-8363071)
chr2 (20-61)||(33357752-33357793)
[»] chr3 (4 HSPs)
chr3 (21-72)||(36612250-36612301)
chr3 (20-65)||(28704006-28704051)
chr3 (20-61)||(32894051-32894092)
chr3 (21-52)||(32895958-32895989)
[»] scaffold0067 (1 HSPs)
scaffold0067 (20-65)||(7733-7778)


Alignment Details
Target: chr8 (Bit Score: 65; Significance: 3e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-29
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 43653858 - 43653922
Alignment:
Q  8 taagcatcattatttggtcaatccccacttacctaattaatagcatccacttacatttgagtgga 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43653858 taagcatcattatttggtcaatccccacttacctaattaatagcatccacttacatttgagtgga 43653922  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 43658677 - 43658741
Alignment:
Q  8 taagcatcattatttggtcaatccccacttacctaattaatagcatccacttacatttgagtgga 72  Q
    |||||||||||||||||| |||||||||||||||| ||||||| ||||||||| |||||||||||    
T  43658677 taagcatcattatttggttaatccccacttacctagttaatagaatccacttatatttgagtgga 43658741  T

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Target: chr1 (Bit Score: 65; Significance: 3e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-29
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 13016725 - 13016661
Alignment:
Q  8 taagcatcattatttggtcaatccccacttacctaattaatagcatccacttacatttgagtgga 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13016725 taagcatcattatttggtcaatccccacttacctaattaatagcatccacttacatttgagtgga 13016661  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 291113 - 291165
Alignment:
Q  20 tttggtcaatccccacttacctaattaatagcatccacttacatttgagtgga 72  Q
    ||||||||||| ||||||||||||||| ||||||||||||| |||| ||||||    
T  291113 tttggtcaatctccacttacctaattagtagcatccacttatattttagtgga 291165  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 36616578 - 36616534
Alignment:
Q  20 tttggtcaatccccacttacctaattaatagcatccacttacatt 64  Q
    |||||||||||  || |||||||||||||||||||||||| ||||    
T  36616578 tttggtcaatcttcatttacctaattaatagcatccacttgcatt 36616534  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 8363026 - 8363071
Alignment:
Q  20 tttggtcaatccccacttacctaattaatagcatccacttacattt 65  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  8363026 tttggtcaatccccacttacctaattagtagcatccacttacattt 8363071  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 33357752 - 33357793
Alignment:
Q  20 tttggtcaatccccacttacctaattaatagcatccacttac 61  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  33357752 tttggtcaatccccacttacctaattagtagcatccacttac 33357793  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 36612301 - 36612250
Alignment:
Q  21 ttggtcaatccccacttacctaattaatagcatccacttacatttgagtgga 72  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||||||||    
T  36612301 ttggtcaatctccacttacctaattaatagaatccacttgcatttgagtgga 36612250  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 28704051 - 28704006
Alignment:
Q  20 tttggtcaatccccacttacctaattaatagcatccacttacattt 65  Q
    |||| ||||||| |||||||||||||| ||||||||||||||||||    
T  28704051 tttgttcaatcctcacttacctaattagtagcatccacttacattt 28704006  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 32894092 - 32894051
Alignment:
Q  20 tttggtcaatccccacttacctaattaatagcatccacttac 61  Q
    |||||||||| |||||||||||||||| ||||||||||||||    
T  32894092 tttggtcaatacccacttacctaattagtagcatccacttac 32894051  T

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Target: chr3; HSP #4
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 52
Target Start/End: Original strand, 32895958 - 32895989
Alignment:
Q  21 ttggtcaatccccacttacctaattaatagca 52  Q
    |||||||||| |||||||||||||||||||||    
T  32895958 ttggtcaatctccacttacctaattaatagca 32895989  T

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Target: scaffold0067 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 7733 - 7778
Alignment:
Q  20 tttggtcaatccccacttacctaattaatagcatccacttacattt 65  Q
    ||||| |||||||||||||| |||||| ||||||||||||| ||||    
T  7733 tttggccaatccccacttacttaattagtagcatccacttatattt 7778  T

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