View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4588-Insertion-2 (Length: 629)
Name: NF4588-Insertion-2
Description: NF4588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4588-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 76 - 626
Target Start/End: Original strand, 2246095 - 2246646
Alignment:
| Q |
76 |
catctttctttctagcaatgtttttaaaaactgactcgaacggttcaaccagttactgtctaattatttgagtggtttgactgcgtttcctctttgctcg |
175 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2246095 |
catctttctttctagcaatgtttttaaaaactgactcgaacggttcaaccagttactgtctaattatttgagtggttcgactgcgtttcctctttgctcg |
2246194 |
T |
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| Q |
176 |
attgatttaacggactagaaggtctcggtgactcaatgtccgtttcagttttcaaaacactgatttctagctttataagtgtgtacaacaaataatattt |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2246195 |
attgatttaacggactagaaggtctcggtgactcaatgtccgtttcagttttcaaaacactgatttctagctttataagtgtgtacaacaaataatattt |
2246294 |
T |
|
| Q |
276 |
ctatattaacttttctccattgtaaatccaacattggaattaagtgggaattcattcatactcttgaatttcctcagtaggacttgttgcaaccgcagca |
375 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2246295 |
ctatatcaacttttctccattgtaaatctaacattggaattaagtgggaattcattcatactcttgaatttcctcagtaggacttgttgcaaccgcagca |
2246394 |
T |
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| Q |
376 |
gcagcattgactacatgcctaactttcacatgtctttccttcatagggtaacatcttggtagtgaaacattgagaaaattacttcctgcatcagaaacta |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||| |
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| T |
2246395 |
gcagcattgactacatgcctaactttcacatgtctttccttcatagggtaacatcttggcagtgaaacattgagaaaattacttcctgcataaaaaacta |
2246494 |
T |
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| Q |
476 |
tgaagtgttacacacatgaaaaagcttgtac-nnnnnnnnnnnnnnnnaaatatctcttatgatatgtattttgaaagaaataaaatatgatctacttaa |
574 |
Q |
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| T |
2246495 |
tgaagtgttacacacatgaaaaagcttgtactttttttttttttttttaaatatctcttatgatatgtattttgaaagaaataaaatatgatctacttaa |
2246594 |
T |
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| Q |
575 |
acattttttatccaggtttacttcactaaaactaatcctcgttgaccacctt |
626 |
Q |
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| T |
2246595 |
acattttttaaccaggtttacttcactaaaactaatcctcgttgaccacctt |
2246646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 2245996 - 2246062
Alignment:
| Q |
8 |
actattggtatctataaaaacaaaatattgttgttaacctaacctcatcaaaatactatatagtatt |
74 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2245996 |
actattggtatctataaaaacaaaatattgttgttagcctaacctcatcaaaatactatatagtatt |
2246062 |
T |
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