View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4588-Insertion-4 (Length: 513)

Name: NF4588-Insertion-4
Description: NF4588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4588-Insertion-4
NF4588-Insertion-4
[»] chr5 (23 HSPs)
chr5 (91-355)||(19598757-19599021)
chr5 (351-480)||(16838488-16838614)
chr5 (234-345)||(13951453-13951564)
chr5 (8-41)||(19599065-19599098)
chr5 (322-354)||(36302946-36302978)
chr5 (320-355)||(33903-33938)
chr5 (320-354)||(18026148-18026182)
chr5 (320-353)||(5070779-5070812)
chr5 (449-490)||(6531166-6531207)
chr5 (297-346)||(6923235-6923284)
chr5 (320-353)||(7458576-7458609)
chr5 (320-353)||(9248928-9248961)
chr5 (320-353)||(21195284-21195317)
chr5 (320-353)||(24781213-24781246)
chr5 (320-353)||(39932811-39932844)
chr5 (322-354)||(11130150-11130182)
chr5 (127-175)||(13951662-13951710)
chr5 (13-41)||(13951806-13951834)
chr5 (321-353)||(14640247-14640279)
chr5 (322-354)||(19282692-19282724)
chr5 (322-354)||(35584964-35584996)
chr5 (297-353)||(38394124-38394180)
chr5 (297-353)||(39895797-39895853)
[»] chr7 (25 HSPs)
chr7 (91-353)||(21944680-21944942)
chr7 (133-350)||(23252770-23252988)
chr7 (460-513)||(40033359-40033412)
chr7 (8-41)||(21944986-21945019)
chr7 (320-356)||(7978990-7979026)
chr7 (297-356)||(6696615-6696674)
chr7 (322-353)||(43073982-43074013)
chr7 (329-360)||(46944479-46944510)
chr7 (322-356)||(12804378-12804412)
chr7 (322-356)||(16875914-16875948)
chr7 (320-354)||(19866525-19866559)
chr7 (297-355)||(32267525-32267582)
chr7 (297-355)||(42808239-42808297)
chr7 (322-355)||(3945127-3945160)
chr7 (320-353)||(19293044-19293077)
chr7 (320-353)||(23709560-23709593)
chr7 (297-354)||(23726372-23726429)
chr7 (320-353)||(29669272-29669305)
chr7 (320-353)||(31466048-31466081)
chr7 (321-354)||(40353881-40353914)
chr7 (322-355)||(44452185-44452218)
chr7 (328-357)||(47578935-47578964)
chr7 (329-361)||(39430341-39430373)
chr7 (297-353)||(41877928-41877984)
chr7 (297-353)||(42149602-42149658)
[»] chr4 (27 HSPs)
chr4 (100-354)||(17382316-17382569)
chr4 (130-359)||(13096213-13096441)
chr4 (320-360)||(23138029-23138069)
chr4 (8-41)||(13096118-13096151)
chr4 (320-357)||(22100911-22100948)
chr4 (320-353)||(28002514-28002547)
chr4 (320-360)||(10125729-10125769)
chr4 (320-354)||(30609227-30609261)
chr4 (320-354)||(37175418-37175452)
chr4 (320-353)||(288344-288377)
chr4 (8-41)||(17382231-17382264)
chr4 (320-353)||(19877753-19877786)
chr4 (322-355)||(23236996-23237029)
chr4 (320-353)||(27851167-27851200)
chr4 (320-353)||(30649834-30649867)
chr4 (322-355)||(37731005-37731038)
chr4 (297-354)||(42168505-42168562)
chr4 (320-353)||(54270769-54270802)
chr4 (320-353)||(56235149-56235182)
chr4 (329-357)||(6629130-6629158)
chr4 (321-353)||(16605187-16605219)
chr4 (322-354)||(23222470-23222502)
chr4 (297-353)||(23511092-23511148)
chr4 (297-353)||(25063607-25063663)
chr4 (329-361)||(26855579-26855611)
chr4 (297-353)||(36871246-36871302)
chr4 (328-356)||(56038672-56038700)
[»] chr1 (17 HSPs)
chr1 (91-343)||(38202368-38202621)
chr1 (133-359)||(4753417-4753644)
chr1 (320-354)||(51905845-51905879)
chr1 (320-353)||(2733841-2733874)
chr1 (320-353)||(15170314-15170347)
chr1 (328-357)||(23827361-23827390)
chr1 (297-354)||(26333280-26333337)
chr1 (322-355)||(28011065-28011098)
chr1 (320-353)||(41457952-41457985)
chr1 (320-353)||(51417615-51417648)
chr1 (321-353)||(290521-290553)
chr1 (297-353)||(4750197-4750253)
chr1 (321-353)||(6540713-6540745)
chr1 (297-353)||(8462278-8462334)
chr1 (322-354)||(16128793-16128825)
chr1 (321-353)||(35379764-35379796)
chr1 (297-353)||(49980264-49980320)
[»] chr2 (29 HSPs)
chr2 (92-353)||(41543658-41543908)
chr2 (320-353)||(8444246-8444279)
chr2 (320-356)||(38959732-38959768)
chr2 (322-353)||(44421575-44421606)
chr2 (320-354)||(8495277-8495311)
chr2 (320-354)||(17399760-17399794)
chr2 (322-356)||(29026965-29026999)
chr2 (320-354)||(43521641-43521675)
chr2 (320-353)||(11216592-11216625)
chr2 (320-353)||(16198392-16198425)
chr2 (321-354)||(21288850-21288883)
chr2 (320-353)||(22154261-22154294)
chr2 (320-353)||(27863049-27863082)
chr2 (329-362)||(28331004-28331037)
chr2 (321-354)||(32068466-32068499)
chr2 (320-353)||(36845820-36845853)
chr2 (320-353)||(37111250-37111283)
chr2 (320-353)||(37985524-37985557)
chr2 (322-354)||(1667010-1667042)
chr2 (322-354)||(3873662-3873694)
chr2 (322-358)||(4898379-4898415)
chr2 (322-358)||(4945773-4945809)
chr2 (322-362)||(11154491-11154531)
chr2 (297-353)||(14724027-14724083)
chr2 (297-353)||(19274940-19274996)
chr2 (297-353)||(19576274-19576330)
chr2 (321-353)||(33677378-33677410)
chr2 (297-353)||(38448340-38448396)
chr2 (322-354)||(40425212-40425244)
[»] chr8 (8 HSPs)
chr8 (133-353)||(42915883-42916104)
chr8 (320-353)||(16861997-16862030)
chr8 (322-361)||(31602965-31603004)
chr8 (320-353)||(15225840-15225873)
chr8 (320-353)||(18526333-18526366)
chr8 (320-353)||(31692734-31692767)
chr8 (320-353)||(38194715-38194748)
chr8 (329-357)||(30087721-30087749)
[»] chr3 (21 HSPs)
chr3 (133-353)||(53534819-53535042)
chr3 (297-353)||(10659428-10659484)
chr3 (297-354)||(4822677-4822734)
chr3 (322-355)||(5925298-5925331)
chr3 (320-353)||(9794474-9794507)
chr3 (320-353)||(22926036-22926069)
chr3 (328-357)||(28226967-28226996)
chr3 (328-357)||(32078014-32078043)
chr3 (320-353)||(43185344-43185377)
chr3 (320-353)||(52870686-52870719)
chr3 (322-354)||(4822931-4822963)
chr3 (297-353)||(15020006-15020062)
chr3 (322-354)||(21272627-21272659)
chr3 (297-353)||(22926264-22926320)
chr3 (328-356)||(29227427-29227455)
chr3 (297-353)||(29652226-29652282)
chr3 (297-353)||(41751329-41751385)
chr3 (321-353)||(44976303-44976335)
chr3 (321-353)||(47109312-47109344)
chr3 (297-353)||(48574640-48574696)
chr3 (297-353)||(54080108-54080164)
[»] chr6 (14 HSPs)
chr6 (297-359)||(19687722-19687784)
chr6 (297-355)||(10364448-10364506)
chr6 (320-353)||(2010317-2010350)
chr6 (297-354)||(3337600-3337657)
chr6 (322-355)||(5489573-5489606)
chr6 (320-353)||(6335212-6335245)
chr6 (320-353)||(10629565-10629598)
chr6 (320-353)||(16524766-16524799)
chr6 (460-501)||(22880757-22880798)
chr6 (460-501)||(22898692-22898733)
chr6 (320-353)||(34283343-34283376)
chr6 (297-353)||(3787320-3787376)
chr6 (321-353)||(24053194-24053226)
chr6 (322-354)||(29901193-29901225)
[»] scaffold0444 (1 HSPs)
scaffold0444 (320-360)||(7588-7628)
[»] scaffold0009 (1 HSPs)
scaffold0009 (320-354)||(8436-8470)
[»] scaffold0459 (1 HSPs)
scaffold0459 (320-353)||(11745-11778)
[»] scaffold0366 (1 HSPs)
scaffold0366 (320-353)||(13052-13085)
[»] scaffold0166 (1 HSPs)
scaffold0166 (320-353)||(23596-23629)
[»] scaffold0262 (1 HSPs)
scaffold0262 (321-353)||(3758-3790)
[»] scaffold0074 (1 HSPs)
scaffold0074 (321-353)||(17458-17490)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 91 - 355
Target Start/End: Complemental strand, 19599021 - 19598757
Alignment:
Q  91 gaaagagagaaagaggtatcgttggattgtttcattatttcattgccttggtagtgcaattgaagagagagaaggaaccgtgtgaattcattgccttaga 190  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  19599021 gaaagagagaaaaaggtatcgttggattgtttcattatttcattgccttggtagtgcaattgaagagagagaaggaaccgtgtgaattcattgccttgga 19598922  T
Q  191 tttcgaggaatttgggacgatggcaatcaagttggagtaattgtgttgccaagggtaaaagaggaaaaaacatatttaattttaacaaagttcacaaaag 290  Q
     || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19598921 gtttgaggaatttgggacggtggcaatcaagttggagtaattgtgttgccaagggtaaaagaggaaaaaacatatttaattttaacaaagttcacaaaag 19598822  T
Q  291 ttaaagatttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagtaat 355  Q
    ||||||||||||||||||||||| ||||||||||||  |||| ||||||||||||||||||||||    
T  19598821 ttaaagatttcttaatatgcgtagaagtgccaaagcggcatataatttgggacggagggagtaat 19598757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 351 - 480
Target Start/End: Complemental strand, 16838614 - 16838488
Alignment:
Q  351 gtaattattaggcacatgtgcattgaatctatccaatagtaaatttgaatttattccatcaattacattgctaacttaattgaatgtcactttacactaa 450  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16838614 gtaattattaggcacatgtgca--gaatctatccaatagtaaatttgattttattccattaattacattgctaacttaattgaatgtcactttacactaa 16838517  T
Q  451 ttttaacaagggtttttctaacctctgcaa 480  Q
    ||||||||| |||||||||||||| |||||    
T  16838516 ttttaacaa-ggtttttctaacctatgcaa 16838488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 234 - 345
Target Start/End: Complemental strand, 13951564 - 13951453
Alignment:
Q  234 tgttgccaagggtaaaagaggaaaaaacatatttaattttaacaaagttcacaaaagttaaagatttcttaatatgcgtaaaagtgccaaagcaacatac 333  Q
    ||||| ||||||||||||||| ||||| ||||||| |||| |||||||| |||||||||| |||||||||||||| |||||||||| |||||| ||||||    
T  13951564 tgttgtcaagggtaaaagagggaaaaatatatttacttttgacaaagtttacaaaagttagagatttcttaatatacgtaaaagtgtcaaagcgacatac 13951465  T
Q  334 aatttgggacgg 345  Q
    ||||| ||||||    
T  13951464 aatttaggacgg 13951453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 19599098 - 19599065
Alignment:
Q  8 gaaacttgaaatattttcatgaacaaattggagg 41  Q
    ||||||||||||||||||||||||||||||||||    
T  19599098 gaaacttgaaatattttcatgaacaaattggagg 19599065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 36302946 - 36302978
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaa 354  Q
    |||||||||||||||||||||||||||||||||    
T  36302946 aaagcaacatacaatttgggacggagggagtaa 36302978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 355
Target Start/End: Original strand, 33903 - 33938
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagtaat 355  Q
    ||||||| ||||||||||||||||||||||||||||    
T  33903 ccaaagcgacatacaatttgggacggagggagtaat 33938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 18026148 - 18026182
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||||| |||||||||||||||||||||||||||    
T  18026148 ccaaagcgacatacaatttgggacggagggagtaa 18026182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 5070812 - 5070779
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  5070812 ccaaagcgacatacaatttgggacggagggagta 5070779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 490
Target Start/End: Original strand, 6531166 - 6531207
Alignment:
Q  449 aattttaacaagggtttttctaacctctgcaacattacatag 490  Q
    |||| ||||||||||||||||||||| ||||||||| |||||    
T  6531166 aattataacaagggtttttctaacctatgcaacattgcatag 6531207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 6923235 - 6923284
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacgga 346  Q
    |||||||||||||||| |||  |||||| | |||||||||||||||||||    
T  6923235 atttcttaatatgcgtgaaatggccaaaacgacatacaatttgggacgga 6923284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 7458609 - 7458576
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  7458609 ccaaagcgacatacaatttgggacggagggagta 7458576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 9248961 - 9248928
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  9248961 ccaaagcgacatacaatttgggacggagggagta 9248928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 21195284 - 21195317
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  21195284 ccaaagcgacatacaatttgggacggagggagta 21195317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 24781213 - 24781246
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  24781213 ccaaagcgacatacaatttgggacggagggagta 24781246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 39932844 - 39932811
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  39932844 ccaaagcgacatacaatttgggacggagggagta 39932811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 354
Target Start/End: Complemental strand, 11130182 - 11130150
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaa 354  Q
    |||| ||||||||||||||||||||||||||||    
T  11130182 aaagtaacatacaatttgggacggagggagtaa 11130150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 13951710 - 13951662
Alignment:
Q  127 atttcattgccttggtagtgcaattgaagagagagaaggaaccgtgtga 175  Q
    ||||||||||||||||  || |||||||||||| |||| ||||||||||    
T  13951710 atttcattgccttggtgctggaattgaagagagggaagtaaccgtgtga 13951662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 13951834 - 13951806
Alignment:
Q  13 ttgaaatattttcatgaacaaattggagg 41  Q
    |||||||||||||||||||||||||||||    
T  13951834 ttgaaatattttcatgaacaaattggagg 13951806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 14640247 - 14640279
Alignment:
Q  321 caaagcaacatacaatttgggacggagggagta 353  Q
    |||||| ||||||||||||||||||||||||||    
T  14640247 caaagccacatacaatttgggacggagggagta 14640279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 19282692 - 19282724
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||| |||||||||||||||||||||||||||    
T  19282692 aaagcgacatacaatttgggacggagggagtaa 19282724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 35584964 - 35584996
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||| |||||||||||||||||||||||||||    
T  35584964 aaagcgacatacaatttgggacggagggagtaa 35584996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 38394180 - 38394124
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||| | || |||  |||||| || |||||||||||||||||||||||||    
T  38394180 atttcttaatacgtgtgaaatggccaaaacatcatacaatttgggacggagggagta 38394124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 39895853 - 39895797
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||| || |||   ||||| || |||||||||||||||||||||||||    
T  39895853 atttcttaatatgtgtgaaatgtccaaaacatcatacaatttgggacggagggagta 39895797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 91 - 353
Target Start/End: Complemental strand, 21944942 - 21944680
Alignment:
Q  91 gaaagagagaaagaggtatcgttggattgtttcattatttcattgccttggtagtgcaattgaagagagagaaggaaccgtgtgaattcattgccttaga 190  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||| ||    
T  21944942 gaaagagagaaagaggtatcgttgcattgtttcattatttcattgccttggtaatgcaatggaagatagagaaggaaccgtgtgaattcattgccttgga 21944843  T
Q  191 tttcgaggaatttgggacgatggcaatcaagttggagtaattgtgttgccaagggtaaaagaggaaaaaacatatttaattttaacaaagttcacaaaag 290  Q
     || ||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21944842 gttggaggaatttgggacggtgacaatcaagttggagtaattgtgttgccaaggataaaagaggaaaaaacatatttaattttaacaaagttcacaaaag 21944743  T
Q  291 ttaaagatttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||    
T  21944742 ttaaagatttcttaatatgcgtaaaagtgccaaagcaacgtacaatttggaacggaaggagta 21944680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 133 - 350
Target Start/End: Complemental strand, 23252988 - 23252770
Alignment:
Q  133 ttgccttggtag-tgcaattgaagagagagaaggaaccgtgtgaattcattgccttagatttcgaggaatttgggacgatggcaatcaagttggagtaat 231  Q
    |||||||||||  ||||||||||||||||||||||| | | ||||||||||||||| || || ||||||| ||||||| ||||||| |||||||||||||    
T  23252988 ttgccttggtacatgcaattgaagagagagaaggaatcatatgaattcattgccttggagttggaggaatgtgggacggtggcaattaagttggagtaat 23252889  T
Q  232 tgtgttgccaagggtaaaagaggaaaaaacatatttaattttaacaaagttcacaaaagttaaagatttcttaatatgcgtaaaagtgccaaagcaacat 331  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| || |||||| || |    
T  23252888 tgtgttgccaagggtaaaagaggaaaacacatatttaattttaacaaagttcataaaagttaaatatttcttaatatgcgaaaaaatgtcaaagcgactt 23252789  T
Q  332 acaatttgggacggaggga 350  Q
    ||| | |||||||||||||    
T  23252788 acattgtgggacggaggga 23252770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 40033359 - 40033412
Alignment:
Q  460 gggtttttctaacctctgcaacattacatagaataagatgtagttaatgtccca 513  Q
    |||||||| |||||| ||||||||||||||  ||||||||||||||||||||||    
T  40033359 gggtttttttaacctatgcaacattacataagataagatgtagttaatgtccca 40033412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 21945019 - 21944986
Alignment:
Q  8 gaaacttgaaatattttcatgaacaaattggagg 41  Q
    ||||||||||||||||||||||||||||||||||    
T  21945019 gaaacttgaaatattttcatgaacaaattggagg 21944986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 7979026 - 7978990
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagtaatt 356  Q
    |||||| ||||||||||||||||||||||||||||||    
T  7979026 ccaaagtaacatacaatttgggacggagggagtaatt 7978990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 6696674 - 6696615
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagtaatt 356  Q
    ||||||||||||| ||||||   ||||| |  ||||||||||||||||||||||||||||    
T  6696674 atttcttaatatgtgtaaaatgcccaaaacgtcatacaatttgggacggagggagtaatt 6696615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 353
Target Start/End: Original strand, 43073982 - 43074013
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||||||||||||||||||||||    
T  43073982 aaagcaacatacaatttgggacggagggagta 43074013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 360
Target Start/End: Complemental strand, 46944510 - 46944479
Alignment:
Q  329 catacaatttgggacggagggagtaattatta 360  Q
    ||||||||||||||||||||||||||||||||    
T  46944510 catacaatttgggacggagggagtaattatta 46944479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 356
Target Start/End: Complemental strand, 12804412 - 12804378
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaatt 356  Q
    ||||||||||||||||||||||| |||||||||||    
T  12804412 aaagcaacatacaatttgggacgcagggagtaatt 12804378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 356
Target Start/End: Original strand, 16875914 - 16875948
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaatt 356  Q
    |||||| ||||||||||||||||||||||||||||    
T  16875914 aaagcagcatacaatttgggacggagggagtaatt 16875948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 19866525 - 19866559
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||||| |||||||||||||||||||||||||||    
T  19866525 ccaaagcgacatacaatttgggacggagggagtaa 19866559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 32267582 - 32267525
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagtaat 355  Q
    ||||||||||||| || ||| ||||||| |  |||||||||||||||||||||||||||    
T  32267582 atttcttaatatgtgtgaaa-tgccaaaacgtcatacaatttgggacggagggagtaat 32267525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 42808297 - 42808239
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagtaat 355  Q
    ||||||||||| | ||||||  |||||| || |||||||||||| ||||||||||||||    
T  42808297 atttcttaatacgtgtaaaatggccaaaacatcatacaatttggaacggagggagtaat 42808239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 3945160 - 3945127
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaat 355  Q
    ||||| ||||||||||||||||||||||||||||    
T  3945160 aaagcgacatacaatttgggacggagggagtaat 3945127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 19293077 - 19293044
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  19293077 ccaaagcgacatacaatttgggacggagggagta 19293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 23709593 - 23709560
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  23709593 ccaaagcgacatacaatttgggacggagggagta 23709560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 23726429 - 23726372
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||||||||||| ||||||   ||||| |  ||||||||||||||||||||||||||    
T  23726429 atttcttaatatgtgtaaaatgcccaaaacgtcatacaatttgggacggagggagtaa 23726372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 29669305 - 29669272
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  29669305 ccaaagcgacatacaatttgggacggagggagta 29669272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 31466081 - 31466048
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  31466081 ccaaagcgacatacaatttgggacggagggagta 31466048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 354
Target Start/End: Original strand, 40353881 - 40353914
Alignment:
Q  321 caaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||| ||||||||||||||||||||||||||||    
T  40353881 caaagtaacatacaatttgggacggagggagtaa 40353914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 44452218 - 44452185
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaat 355  Q
    ||||| ||||||||||||||||||||||||||||    
T  44452218 aaagcgacatacaatttgggacggagggagtaat 44452185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 357
Target Start/End: Original strand, 47578935 - 47578964
Alignment:
Q  328 acatacaatttgggacggagggagtaatta 357  Q
    ||||||||||||||||||||||||||||||    
T  47578935 acatacaatttgggacggagggagtaatta 47578964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 361
Target Start/End: Original strand, 39430341 - 39430373
Alignment:
Q  329 catacaatttgggacggagggagtaattattag 361  Q
    |||||||||||||||||||||||||||| ||||    
T  39430341 catacaatttgggacggagggagtaattgttag 39430373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 41877928 - 41877984
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    |||||||||||||||| |||   ||||| |  |||||||||||||||||||||||||    
T  41877928 atttcttaatatgcgtgaaatgcccaaaacgtcatacaatttgggacggagggagta 41877984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 42149658 - 42149602
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||| |||||| | ||||| |  | |||||||||||||||||||||||    
T  42149658 atttcttaatatgtgtaaaattcccaaaacgtcgtacaatttgggacggagggagta 42149602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 100 - 354
Target Start/End: Original strand, 17382316 - 17382569
Alignment:
Q  100 aaagaggtatcgttggattgtttcattatttcattgccttggtagtgcaattgaagagagagaaggaaccgtgtgaattcattgccttagatttcgagga 199  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || || |||||    
T  17382316 aaagaggtatcgttggattgtttcattatttcattgccttggtactgcaattgaagagagagaaggaaccgtgtgaattcattgccttggagttggagga 17382415  T
Q  200 atttgggacgatggcaatcaagttggagtaattgtgttgccaagggtaaaagaggaaaaaacatatttaattttaacaaagttcacaaaagttaaagatt 299  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  17382416 atttgggacggtggcaatcaagttggaataattgtgttgccaagggtaaaagagg-aaaaacatatctaattttaacaaagttcacaaaagttaaagatt 17382514  T
Q  300 tcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagtaa 354  Q
    |||||||||| |||||||||||||||| || |||||||||| |||||||||||||    
T  17382515 tcttaatatgtgtaaaagtgccaaagcgacgtacaatttggaacggagggagtaa 17382569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 130 - 359
Target Start/End: Original strand, 13096213 - 13096441
Alignment:
Q  130 tcattgccttggtagtgcaattgaagagagagaaggaaccgtgtgaattcattgccttagatttcgaggaatttgggacgatggcaatcaagttggagta 229  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| || ||||||||||| ||| ||||||||||||||| |||    
T  13096213 tcattgccttggtactgcaattgaagagagagaaggaaccgtgtgaattcaattccttagagttggaggaatttgg-acggtggcaatcaagttggggta 13096311  T
Q  230 attgtgttgccaagggtaaaagaggaaaaaacatatttaattttaacaaagttcacaaaagttaaagatttcttaatatgcgtaaaagtgccaaagcaac 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||    
T  13096312 attgtgttgccaagggtaaaagaggaaaaaacatatttaattttaacaaagttcacaaaagttaaatatttcttaatatgcgtaaaagtgtcaaagcgac 13096411  T
Q  330 atacaatttgggacggagggagtaattatt 359  Q
    |||||||||||||||||||| ||| |||||    
T  13096412 atacaatttgggacggagggggtatttatt 13096441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 23138069 - 23138029
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagtaattatta 360  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  23138069 ccaaagcgacatacaatttgggacggagggagtaattatta 23138029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 13096118 - 13096151
Alignment:
Q  8 gaaacttgaaatattttcatgaacaaattggagg 41  Q
    ||||||||||||||||||||||||||||||||||    
T  13096118 gaaacttgaaatattttcatgaacaaattggagg 13096151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 357
Target Start/End: Complemental strand, 22100948 - 22100911
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagtaatta 357  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  22100948 ccaaagcgacatacaatttgggacggagggagtaatta 22100911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 28002547 - 28002514
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||||||||||||||||||||||||    
T  28002547 ccaaagcaacatacaatttgggacggagggagta 28002514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 10125729 - 10125769
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagtaattatta 360  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  10125729 ccaaagcgacatacaatttgggacggagggagtaataatta 10125769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 30609261 - 30609227
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||||| |||||||||||||||||||||||||||    
T  30609261 ccaaagcgacatacaatttgggacggagggagtaa 30609227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 37175418 - 37175452
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||||| |||||||||||||||||||||||||||    
T  37175418 ccaaagcgacatacaatttgggacggagggagtaa 37175452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 288377 - 288344
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  288377 ccaaagcgacatacaatttgggacggagggagta 288344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 17382231 - 17382264
Alignment:
Q  8 gaaacttgaaatattttcatgaacaaattggagg 41  Q
    |||||||||||||||||||||||||||| |||||    
T  17382231 gaaacttgaaatattttcatgaacaaatcggagg 17382264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 19877786 - 19877753
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  19877786 ccaaagcgacatacaatttgggacggagggagta 19877753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 23237029 - 23236996
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaat 355  Q
    ||||| ||||||||||||||||||||||||||||    
T  23237029 aaagcgacatacaatttgggacggagggagtaat 23236996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 27851200 - 27851167
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  27851200 ccaaagcgacatacaatttgggacggagggagta 27851167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 30649834 - 30649867
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||||||||||| ||||||||||||    
T  30649834 ccaaagcaacatacaatttggaacggagggagta 30649867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 355
Target Start/End: Original strand, 37731005 - 37731038
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaat 355  Q
    ||||| ||||||||||||||||||||||||||||    
T  37731005 aaagcgacatacaatttgggacggagggagtaat 37731038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 42168505 - 42168562
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||||||||||| || |||   ||||| || ||||||||||||||||||||||||||    
T  42168505 atttcttaatatgtgtgaaatgcccaaaacatcatacaatttgggacggagggagtaa 42168562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 54270802 - 54270769
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  54270802 ccaaagcgacatacaatttgggacggagggagta 54270769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 56235182 - 56235149
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  56235182 ccaaagcgacatacaatttgggacggagggagta 56235149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 357
Target Start/End: Original strand, 6629130 - 6629158
Alignment:
Q  329 catacaatttgggacggagggagtaatta 357  Q
    |||||||||||||||||||||||||||||    
T  6629130 catacaatttgggacggagggagtaatta 6629158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 353
Target Start/End: Complemental strand, 16605219 - 16605187
Alignment:
Q  321 caaagcaacatacaatttgggacggagggagta 353  Q
    |||||| ||||||||||||||||||||||||||    
T  16605219 caaagcgacatacaatttgggacggagggagta 16605187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 354
Target Start/End: Complemental strand, 23222502 - 23222470
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||| |||||||||||||||||||||||||||    
T  23222502 aaagcgacatacaatttgggacggagggagtaa 23222470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 23511148 - 23511092
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||| || |||   ||||| || |||||||||||||||||||||||||    
T  23511148 atttcttaatatgtgtgaaatgcccaaaacatcatacaatttgggacggagggagta 23511092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 25063663 - 25063607
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||| || ||| ||||||| |  | |||||||||||||||||||||||    
T  25063663 atttcttaatatgtgtgaaattgccaaaacgtcttacaatttgggacggagggagta 25063607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 361
Target Start/End: Original strand, 26855579 - 26855611
Alignment:
Q  329 catacaatttgggacggagggagtaattattag 361  Q
    |||||||||||||||||||||||||||| ||||    
T  26855579 catacaatttgggacggagggagtaatttttag 26855611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 36871302 - 36871246
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    |||||||||||||||| |||   ||||| |  |||||||||||||||||||||||||    
T  36871302 atttcttaatatgcgtgaaatgcccaaaacgtcatacaatttgggacggagggagta 36871246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 356
Target Start/End: Original strand, 56038672 - 56038700
Alignment:
Q  328 acatacaatttgggacggagggagtaatt 356  Q
    |||||||||||||||||||||||||||||    
T  56038672 acatacaatttgggacggagggagtaatt 56038700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 198; Significance: 1e-107; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 91 - 343
Target Start/End: Original strand, 38202368 - 38202621
Alignment:
Q  91 gaaagagagaaagaggtatcgttggattgtttcattatttcattgccttggtagtgcaattgaagagagagaaggaaccgtgtgaattcattgccttaga 190  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  38202368 gaaagagacaaagaggtatcgttggattgtttcattatttcattgtcttggtactgcaattgaagagagagaaggaaccgtgtgaattcattgccttgga 38202467  T
Q  191 tttcgaggaatttgggacgatggcaatcaagttggagtaattgtgttgccaagggtaaaagagg-aaaaaacatatttaattttaacaaagttcacaaaa 289  Q
     || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  38202468 gttggaggaatttgggacggtggcaatcaagttggagtaattgtgttgccaagggtaaaagaggaaaaaaacatatctaattttaacaaagttcacaaaa 38202567  T
Q  290 gttaaagatttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggac 343  Q
    |||||| ||||||||||||| ||||||||| |||||||||||||||||| ||||    
T  38202568 gttaaatatttcttaatatgtgtaaaagtgtcaaagcaacatacaatttaggac 38202621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 133 - 359
Target Start/End: Complemental strand, 4753644 - 4753417
Alignment:
Q  133 ttgccttggtag-tgcaattgaagagagagaaggaaccgtgtgaattcattgccttagatttcgaggaatttgggacgatggcaatcaagttggagtaat 231  Q
    |||||||||||  ||||||||||||||||||||||| | | ||||||||||||||| || || ||||||| ||||| | ||||||| |||||||||||||    
T  4753644 ttgccttggtacatgcaattgaagagagagaaggaatcatatgaattcattgccttggagttggaggaatgtgggatggtggcaattaagttggagtaat 4753545  T
Q  232 tgtgttgccaagggtaaaagaggaaaaaacatatttaattttaacaaagttcacaaaagttaaagatttcttaatatgcgtaaaagtgccaaagcaacat 331  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||| || |    
T  4753544 tgtgttgccaagggtaaaagaggaaaacacatatttaattttaacaaagttcacaaaagttaaatatttcttaatatacgtaaaagtgtcaaagcgactt 4753445  T
Q  332 acaatttgggacggagggagtaattatt 359  Q
    ||| | |||||||||||||||| |||||    
T  4753444 acattgtgggacggagggagtatttatt 4753417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 51905845 - 51905879
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||||| |||||||||||||||||||||||||||    
T  51905845 ccaaagcgacatacaatttgggacggagggagtaa 51905879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 2733874 - 2733841
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  2733874 ccaaagcgacatacaatttgggacggagggagta 2733841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 15170314 - 15170347
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  15170314 ccaaagcgacatacaatttgggacggagggagta 15170347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 357
Target Start/End: Complemental strand, 23827390 - 23827361
Alignment:
Q  328 acatacaatttgggacggagggagtaatta 357  Q
    ||||||||||||||||||||||||||||||    
T  23827390 acatacaatttgggacggagggagtaatta 23827361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 26333337 - 26333280
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||||||||||| || |||   ||||| || ||||||||||||||||||||||||||    
T  26333337 atttcttaatatgtgtgaaatgcccaaaacatcatacaatttgggacggagggagtaa 26333280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 28011098 - 28011065
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaat 355  Q
    ||||| ||||||||||||||||||||||||||||    
T  28011098 aaagcgacatacaatttgggacggagggagtaat 28011065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 41457952 - 41457985
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||||||| ||||||||||||||||    
T  41457952 ccaaagcaacatacaatatgggacggagggagta 41457985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 51417615 - 51417648
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  51417615 ccaaagcgacatacaatttgggacggagggagta 51417648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 290521 - 290553
Alignment:
Q  321 caaagcaacatacaatttgggacggagggagta 353  Q
    |||||| ||||||||||||||||||||||||||    
T  290521 caaagcgacatacaatttgggacggagggagta 290553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 4750253 - 4750197
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    |||||||||||||||| |||   ||||| |  |||||||||||||||||||||||||    
T  4750253 atttcttaatatgcgtgaaatgtccaaaacgtcatacaatttgggacggagggagta 4750197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 6540713 - 6540745
Alignment:
Q  321 caaagcaacatacaatttgggacggagggagta 353  Q
    |||||| ||||||||||||||||||||||||||    
T  6540713 caaagcgacatacaatttgggacggagggagta 6540745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 8462334 - 8462278
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||| || |||   ||||| || |||||||||||||||||||||||||    
T  8462334 atttcttaatatgtgtgaaatgtccaaaacatcatacaatttgggacggagggagta 8462278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 16128793 - 16128825
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||||||||||||||||||||||||| |||||    
T  16128793 aaagcaacatacaatttgggacggaggaagtaa 16128825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 35379764 - 35379796
Alignment:
Q  321 caaagcaacatacaatttgggacggagggagta 353  Q
    |||||| ||||||||||||||||||||||||||    
T  35379764 caaagcgacatacaatttgggacggagggagta 35379796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 49980320 - 49980264
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||| ||||||   ||||| |  |||||||||||||||||||||||||    
T  49980320 atttcttaatatgtgtaaaatgtccaaaacgtcatacaatttgggacggagggagta 49980264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 92 - 353
Target Start/End: Complemental strand, 41543908 - 41543658
Alignment:
Q  92 aaagagagaaagaggtatcgttggattgtttcattatttcattgccttggtagtgcaattgaagagagagaaggaaccgtgtgaattcattgccttagat 191  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||| ||     
T  41543908 aaagagagaaagaggtatcgttggattgttttattatttcattgccttagtactccaattgaagagagagaaggaaccgtgtgaattcattgccttggag 41543809  T
Q  192 ttcgaggaatttgggacgatggcaatcaagttggagtaattgtgttgccaagggtaaaagaggaaaaaacatatttaattttaacaaagttcacaaaagt 291  Q
    || ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||||||    
T  41543808 ttggaggaatttgggacggt-gcaatcaagttggagtaattgtgttgccaagggtaaaagagg-aaaaacatatttaatt---------ttcacaaaagt 41543720  T
Q  292 taaagatttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||    
T  41543719 taaagatttcttaatatgcgtaaaagtaccaaagcgacatataatttaggacggagggagta 41543658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 8444246 - 8444279
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||||||||||||||||||||||||    
T  8444246 ccaaagcaacatacaatttgggacggagggagta 8444279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 38959768 - 38959732
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagtaatt 356  Q
    ||||||| |||||||||||||||||||||||||||||    
T  38959768 ccaaagcgacatacaatttgggacggagggagtaatt 38959732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 353
Target Start/End: Complemental strand, 44421606 - 44421575
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||||||||||||||||||||||    
T  44421606 aaagcaacatacaatttgggacggagggagta 44421575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 8495311 - 8495277
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||||| |||||||||||||||||||||||||||    
T  8495311 ccaaagcgacatacaatttgggacggagggagtaa 8495277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 17399794 - 17399760
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||||| |||||||||||||||||||||||||||    
T  17399794 ccaaagcgacatacaatttgggacggagggagtaa 17399760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 356
Target Start/End: Complemental strand, 29026999 - 29026965
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaatt 356  Q
    ||||| |||||||||||||||||||||||||||||    
T  29026999 aaagcgacatacaatttgggacggagggagtaatt 29026965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 43521641 - 43521675
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||||| |||||||||||||||||||||||||||    
T  43521641 ccaaagcgacatacaatttgggacggagggagtaa 43521675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 11216625 - 11216592
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  11216625 ccaaagcgacatacaatttgggacggagggagta 11216592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 16198425 - 16198392
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  16198425 ccaaagcgacatacaatttgggacggagggagta 16198392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 354
Target Start/End: Complemental strand, 21288883 - 21288850
Alignment:
Q  321 caaagcaacatacaatttgggacggagggagtaa 354  Q
    |||||| |||||||||||||||||||||||||||    
T  21288883 caaagcgacatacaatttgggacggagggagtaa 21288850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 22154261 - 22154294
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  22154261 ccaaagcgacatacaatttgggacggagggagta 22154294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 27863049 - 27863082
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  27863049 ccaaagcgacatacaatttgggacggagggagta 27863082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 362
Target Start/End: Original strand, 28331004 - 28331037
Alignment:
Q  329 catacaatttgggacggagggagtaattattagg 362  Q
    |||||||||||||||||||||||||||| |||||    
T  28331004 catacaatttgggacggagggagtaatttttagg 28331037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 354
Target Start/End: Original strand, 32068466 - 32068499
Alignment:
Q  321 caaagcaacatacaatttgggacggagggagtaa 354  Q
    |||||| |||||||||||||||||||||||||||    
T  32068466 caaagcgacatacaatttgggacggagggagtaa 32068499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 36845853 - 36845820
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  36845853 ccaaagcgacatacaatttgggacggagggagta 36845820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 37111250 - 37111283
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  37111250 ccaaagcgacatacaatttgggacggagggagta 37111283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 37985557 - 37985524
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  37985557 ccaaagcgacatacaatttgggacggagggagta 37985524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 1667010 - 1667042
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||| |||||||||||||||||||||||||||    
T  1667010 aaagcgacatacaatttgggacggagggagtaa 1667042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 3873662 - 3873694
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||| |||||||||||||||||||||||||||    
T  3873662 aaagcgacatacaatttgggacggagggagtaa 3873694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 4898379 - 4898415
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaattat 358  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  4898379 aaagcgacatacaatttgggacggagggagtatttat 4898415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 4945773 - 4945809
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaattat 358  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  4945773 aaagcgacatacaatttgggacggagggagtatttat 4945809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 11154491 - 11154531
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaattattagg 362  Q
    ||||| |||||||||||||||||||||||||| || |||||    
T  11154491 aaagcgacatacaatttgggacggagggagtagtttttagg 11154531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 14724027 - 14724083
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||| | ||||||  |||||| |  |||||||||||||||||||||||||    
T  14724027 atttcttaatacgtgtaaaatggccaaaacgtcatacaatttgggacggagggagta 14724083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 19274996 - 19274940
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||| ||||||   ||||| || |||| ||||||||||||||||||||    
T  19274996 atttcttaatatgtgtaaaatgtccaaaacatcatataatttgggacggagggagta 19274940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 19576274 - 19576330
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||| || |||   ||||| || |||||||||||||||||||||||||    
T  19576274 atttcttaatatgtgtgaaatgcccaaaacatcatacaatttgggacggagggagta 19576330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 33677378 - 33677410
Alignment:
Q  321 caaagcaacatacaatttgggacggagggagta 353  Q
    |||||| ||||||||||||||||||||||||||    
T  33677378 caaagcgacatacaatttgggacggagggagta 33677410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 38448340 - 38448396
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||| || |||   ||||| | ||||||||||||||||||||||||||    
T  38448340 atttcttaatatgtgtgaaatgcccaaaacgacatacaatttgggacggagggagta 38448396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 40425212 - 40425244
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||| |||||||||||||||||||||||||||    
T  40425212 aaagcgacatacaatttgggacggagggagtaa 40425244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 3e-74; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 133 - 353
Target Start/End: Complemental strand, 42916104 - 42915883
Alignment:
Q  133 ttgccttggtag-tgcaattgaagagagagaaggaaccgtgtgaattcattgccttagatttcgaggaatttgggacgatggcaatcaagttggagtaat 231  Q
    |||||||||||  ||||||||||||||||||||||| | | ||||||||||||||| || || ||||||| ||||||| ||||||| |||||||||||||    
T  42916104 ttgccttggtacatgcaattgaagagagagaaggaatcatatgaattcattgccttggagttggaggaatgtgggacggtggcaattaagttggagtaat 42916005  T
Q  232 tgtgttgccaagggtaaaagaggaaaaaacatatttaattttaacaaagttcacaaaagttaaagatttcttaatatgcgtaaaagtgccaaagcaacat 331  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| || |    
T  42916004 tgtgttgccaagggtaaaagaggaaaacacatatttaattttaacaaagttcataaaagttaaatatttcttaatatgcgtaaaagtgtcaaagcgactt 42915905  T
Q  332 acaatttgggacggagggagta 353  Q
    ||| | ||||||||||||||||    
T  42915904 acattgtgggacggagggagta 42915883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 16861997 - 16862030
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||||||||||||||||||||||||    
T  16861997 ccaaagcaacatacaatttgggacggagggagta 16862030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 361
Target Start/End: Original strand, 31602965 - 31603004
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaattattag 361  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  31602965 aaagcgacatacaatttgggacggagggagtatttattag 31603004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 15225873 - 15225840
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  15225873 ccaaagcgacatacaatttgggacggagggagta 15225840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 18526366 - 18526333
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  18526366 ccaaagcgacatacaatttgggacggagggagta 18526333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 31692767 - 31692734
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  31692767 ccaaagcgacatacaatttgggacggagggagta 31692734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 38194715 - 38194748
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  38194715 ccaaagcgacatacaatttgggacggagggagta 38194748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 357
Target Start/End: Complemental strand, 30087749 - 30087721
Alignment:
Q  329 catacaatttgggacggagggagtaatta 357  Q
    |||||||||||||||||||||||||||||    
T  30087749 catacaatttgggacggagggagtaatta 30087721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 3e-71; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 133 - 353
Target Start/End: Original strand, 53534819 - 53535042
Alignment:
Q  133 ttgccttggtag-tgcaattgaagag--agagaaggaaccgtgtgaattcattgccttagatttcgaggaatttgggacgatggcaatcaagttggagta 229  Q
    |||||||||||  |||||||||||||  |||||||||||| | ||||||||||||||| || || ||||||| ||||| | ||||||| |||||||||||    
T  53534819 ttgccttggtacatgcaattgaagagagagagaaggaaccatatgaattcattgccttggagttggaggaatgtgggatggtggcaattaagttggagta 53534918  T
Q  230 attgtgttgccaagggtaaaagaggaaaaaacatatttaattttaacaaagttcacaaaagttaaagatttcttaatatgcgtaaaagtgccaaagcaac 329  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||    
T  53534919 attgtgttgccaagggtaaaagaggaaaacacatatttaattttaacaaagttcacaaaagttaaatatttcttaatatgcgtaaaagtgtcaaagcgac 53535018  T
Q  330 atacaatttgggacggagggagta 353  Q
     |||| | ||||||||||||||||    
T  53535019 ttacattgtgggacggagggagta 53535042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 10659428 - 10659484
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||| || |||   ||||| ||||||||||||||||||||||||||||    
T  10659428 atttcttaatatgtgtgaaatgcccaaaacaacatacaatttgggacggagggagta 10659484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 4822734 - 4822677
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||||||||||| || |||   ||||| || ||||||||||||||||||||||||||    
T  4822734 atttcttaatatgtgtgaaatgcccaaaacatcatacaatttgggacggagggagtaa 4822677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 5925331 - 5925298
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaat 355  Q
    ||||| ||||||||||||||||||||||||||||    
T  5925331 aaagcgacatacaatttgggacggagggagtaat 5925298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 9794507 - 9794474
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  9794507 ccaaagcgacatacaatttgggacggagggagta 9794474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 22926069 - 22926036
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  22926069 ccaaagcgacatacaatttgggacggagggagta 22926036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 357
Target Start/End: Complemental strand, 28226996 - 28226967
Alignment:
Q  328 acatacaatttgggacggagggagtaatta 357  Q
    ||||||||||||||||||||||||||||||    
T  28226996 acatacaatttgggacggagggagtaatta 28226967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 357
Target Start/End: Complemental strand, 32078043 - 32078014
Alignment:
Q  328 acatacaatttgggacggagggagtaatta 357  Q
    ||||||||||||||||||||||||||||||    
T  32078043 acatacaatttgggacggagggagtaatta 32078014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 43185377 - 43185344
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  43185377 ccaaagcgacatacaatttgggacggagggagta 43185344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 52870686 - 52870719
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  52870686 ccaaagcgacatacaatttgggacggagggagta 52870719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 4822931 - 4822963
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaa 354  Q
    |||||||||||||||||||||||| ||||||||    
T  4822931 aaagcaacatacaatttgggacggtgggagtaa 4822963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 15020006 - 15020062
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||| || |||   ||||| || |||||||||||||||||||||||||    
T  15020006 atttcttaatatgtgtgaaatgcccaaaacatcatacaatttgggacggagggagta 15020062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 354
Target Start/End: Complemental strand, 21272659 - 21272627
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||| |||||||||||||||||||||||||||    
T  21272659 aaagcgacatacaatttgggacggagggagtaa 21272627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 22926264 - 22926320
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||| | || ||| ||||||| |  |||||||||||||||||||||||||    
T  22926264 atttcttaatacgtgtgaaattgccaaaacgtcatacaatttgggacggagggagta 22926320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 356
Target Start/End: Original strand, 29227427 - 29227455
Alignment:
Q  328 acatacaatttgggacggagggagtaatt 356  Q
    |||||||||||||||||||||||||||||    
T  29227427 acatacaatttgggacggagggagtaatt 29227455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 29652226 - 29652282
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||| ||||||   ||||| || ||||||||||||||||||| |||||    
T  29652226 atttcttaatatgtgtaaaatgcccaaaacatcatacaatttgggacggagagagta 29652282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 41751329 - 41751385
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||| || |||  |||||| |  |||||||||||||||||||||||||    
T  41751329 atttcttaatatgtgtgaaatggccaaaacgtcatacaatttgggacggagggagta 41751385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 353
Target Start/End: Complemental strand, 44976335 - 44976303
Alignment:
Q  321 caaagcaacatacaatttgggacggagggagta 353  Q
    |||||| ||||||||||||||||||||||||||    
T  44976335 caaagcgacatacaatttgggacggagggagta 44976303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 47109312 - 47109344
Alignment:
Q  321 caaagcaacatacaatttgggacggagggagta 353  Q
    |||||| ||||||||||||||||||||||||||    
T  47109312 caaagcgacatacaatttgggacggagggagta 47109344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 48574696 - 48574640
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    |||||||||||||||| |||   ||||| || ||||||||||| |||||||||||||    
T  48574696 atttcttaatatgcgtgaaatgcccaaaacatcatacaatttgagacggagggagta 48574640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 54080164 - 54080108
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    |||||||||||||||| |||   ||||| |  |||||||||||||||||||||||||    
T  54080164 atttcttaatatgcgtgaaatgcccaaaacgtcatacaatttgggacggagggagta 54080108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 19687784 - 19687722
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagtaattatt 359  Q
    ||||||||||| |||| ||||  ||||| |  |||||||||||||||||||||||||||||||    
T  19687784 atttcttaataagcgtgaaaggcccaaaacgtcatacaatttgggacggagggagtaattatt 19687722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 10364506 - 10364448
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagtaat 355  Q
    ||||||||||||| ||||||   ||||| |  |||||||||||||||||||||||||||    
T  10364506 atttcttaatatgtgtaaaatgcccaaaacgtcatacaatttgggacggagggagtaat 10364448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 2010317 - 2010350
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  2010317 ccaaagcgacatacaatttgggacggagggagta 2010350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 3337600 - 3337657
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||||||||||| ||||||   ||||| || |||||||||| |||||||||||||||    
T  3337600 atttcttaatatgtgtaaaatgcccaaaacatcatacaatttaggacggagggagtaa 3337657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 5489606 - 5489573
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaat 355  Q
    ||||| ||||||||||||||||||||||||||||    
T  5489606 aaagcgacatacaatttgggacggagggagtaat 5489573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 6335212 - 6335245
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  6335212 ccaaagcgacatacaatttgggacggagggagta 6335245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 10629565 - 10629598
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  10629565 ccaaagcgacatacaatttgggacggagggagta 10629598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 16524766 - 16524799
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  16524766 ccaaagcgacatacaatttgggacggagggagta 16524799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 501
Target Start/End: Original strand, 22880757 - 22880798
Alignment:
Q  460 gggtttttctaacctctgcaacattacatagaataagatgta 501  Q
    ||||||||||||||| ||||||||| ||||||||||| ||||    
T  22880757 gggtttttctaacctatgcaacattgcatagaataaggtgta 22880798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 501
Target Start/End: Original strand, 22898692 - 22898733
Alignment:
Q  460 gggtttttctaacctctgcaacattacatagaataagatgta 501  Q
    ||||||||||||||| ||||||||| ||||||||||| ||||    
T  22898692 gggtttttctaacctatgcaacattgcatagaataaggtgta 22898733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 34283376 - 34283343
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  34283376 ccaaagcgacatacaatttgggacggagggagta 34283343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 3787320 - 3787376
Alignment:
Q  297 atttcttaatatgcgtaaaagtgccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||||||||| || |||   ||||| || |||||||||||||||||||||||||    
T  3787320 atttcttaatatgtgtgaaatgcccaaaacatcatacaatttgggacggagggagta 3787376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 24053194 - 24053226
Alignment:
Q  321 caaagcaacatacaatttgggacggagggagta 353  Q
    |||||| ||||||||||||||||||||||||||    
T  24053194 caaagcgacatacaatttgggacggagggagta 24053226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 354
Target Start/End: Complemental strand, 29901225 - 29901193
Alignment:
Q  322 aaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||| |||||||||||||||||||||||||||    
T  29901225 aaagcgacatacaatttgggacggagggagtaa 29901193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 7628 - 7588
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagtaattatta 360  Q
    ||||||| ||||||||||||||||||||||||||| |||||    
T  7628 ccaaagcgacatacaatttgggacggagggagtaactatta 7588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 8470 - 8436
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagtaa 354  Q
    ||||||| |||||||||||||||||||||||||||    
T  8470 ccaaagcgacatacaatttgggacggagggagtaa 8436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 11745 - 11778
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  11745 ccaaagcgacatacaatttgggacggagggagta 11778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 13052 - 13085
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  13052 ccaaagcgacatacaatttgggacggagggagta 13085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 23596 - 23629
Alignment:
Q  320 ccaaagcaacatacaatttgggacggagggagta 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  23596 ccaaagcgacatacaatttgggacggagggagta 23629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 353
Target Start/End: Complemental strand, 3790 - 3758
Alignment:
Q  321 caaagcaacatacaatttgggacggagggagta 353  Q
    |||||| ||||||||||||||||||||||||||    
T  3790 caaagcgacatacaatttgggacggagggagta 3758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 353
Target Start/End: Complemental strand, 17490 - 17458
Alignment:
Q  321 caaagcaacatacaatttgggacggagggagta 353  Q
    |||||| ||||||||||||||||||||||||||    
T  17490 caaagcgacatacaatttgggacggagggagta 17458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University