View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4588-Insertion-5 (Length: 349)
Name: NF4588-Insertion-5
Description: NF4588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4588-Insertion-5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 349
Target Start/End: Original strand, 13853561 - 13853902
Alignment:
| Q |
8 |
catacaagtaaagaatctccccattcttaacagtacactcaaacggtgaagggtcattgaagtataaatgaaactttgaaatctcatcctccaagttctc |
107 |
Q |
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| T |
13853561 |
catacaagtaaagaatctccccattcttaacagtacattcaaacggtgaagggtcattgaagtataaaggaaactttgaaatctcatcctccaagttctc |
13853660 |
T |
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| Q |
108 |
cggagaaggaaatacctagtcggcttctcaagttccaaatcaaactctccagtatcctacnnnnnnnnnntatatccacaacaccccaattggattcaat |
207 |
Q |
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| T |
13853661 |
cggagaaggaaatacctagtcggcttctcaagttccaaatcaaactctccagtatcctacaaaaaatatatatatccacaacaccccaaatggattcaat |
13853760 |
T |
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| Q |
208 |
tccaaaagctaaaacctttggcagtgaccttatttgcataaagaacttaactcgacacttatagcgttgacgcttatcatataagtacttatgtgtgaca |
307 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||| |
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| T |
13853761 |
tccaaaagctaaaacctttggcagtgaccttgtttgcataaagaacttaactcgacacttatagcattgacgcttatcatataagtacttatgtataaca |
13853860 |
T |
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| Q |
308 |
aaacgtcaagtaaaatcaaactgtctttatttaagctctatg |
349 |
Q |
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| T |
13853861 |
aaacgtcaagtaaaatcaaactgtctttatttaagctctatg |
13853902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 10220411 - 10220300
Alignment:
| Q |
8 |
catacaagtaaagaatctccccattcttaacagtacactcaaacggtgaagggtcattgaagtataaatgaaactttgaaatctcatcctccaagttctc |
107 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
10220411 |
catacaagtaaagaatctccccagccttgacagtacactcaaacggtggagggccattgaagtataaaggaaactttgaaatctcgtcctccaagttctc |
10220312 |
T |
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| Q |
108 |
cggagaaggaaa |
119 |
Q |
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| T |
10220311 |
cggagaaggaaa |
10220300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 10220275 - 10220227
Alignment:
| Q |
119 |
atacctagtcggcttctcaagttccaaatcaaactctccagtatcctac |
167 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||| |||||| |
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| T |
10220275 |
atacctagttggcttgtcaagttccaaatcaaactctccagtttcctac |
10220227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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