View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4588-Insertion-7 (Length: 182)
Name: NF4588-Insertion-7
Description: NF4588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4588-Insertion-7 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 21508252 - 21508426
Alignment:
| Q |
8 |
gtcttatgttattttatcttattttagtaaactatatgaatatttcctttgttatattagagtagaaaaatgggtgacatttgttataattgtttttgat |
107 |
Q |
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| T |
21508252 |
gtcttatgttattttatcttattttagcaaactatatgaatatttcctttgttatattagagtagaaaaatgggtgacatttgttataattgtttttgat |
21508351 |
T |
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| Q |
108 |
tttatgctagctactagttaggaaacatacgtccatgttcattactaaaaagtaggagatacaacttctttccta |
182 |
Q |
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| T |
21508352 |
tttatgctacctactagttaggaaacatacgtccatgttcattactaaaaagtaggagatacaacttcttcccta |
21508426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 34519072 - 34518990
Alignment:
| Q |
8 |
gtcttatgttattttatcttattttagtaaactatatgaatatttcctttgttatattagagta-gaaaaatgggtgacattt |
89 |
Q |
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| T |
34519072 |
gtcttattttattttatcttattttagcaaactttatgaatatatagtttattatattagattaggaaaaattggtgacattt |
34518990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 28657788 - 28657708
Alignment:
| Q |
9 |
tcttatgttattttatcttattttagtaaactatatgaatatttcctttgttatattagagtagaaaaatgggtgacattt |
89 |
Q |
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| T |
28657788 |
tcttattttattttatcttattttagcaaactatatggatatttactttattatattagagtaggaaaatgggtgacattt |
28657708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 29464142 - 29464224
Alignment:
| Q |
8 |
gtcttatgttattttatcttattttagtaaactatatgaatatttcctttgttatattagagta-gaaaaatgggtgacattt |
89 |
Q |
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||||||| |||| |||| ||||||||| ||||||||||||||||| |||| ||||||||| ||| ||||||| |||||||||| |
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| T |
29464142 |
gtcttattttatgttatattattttagcaaactatatgaatatttactttattatattagggtaggaaaaataggtgacattt |
29464224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 2037753 - 2037835
Alignment:
| Q |
8 |
gtcttatgttattttatcttattttagtaaactatatgaatatttcctttgttatattagagta-gaaaaatgggtgacattt |
89 |
Q |
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| T |
2037753 |
gtcttatttaattttatcttcttttagcaaactttatgaatatgtagtttattatattagagtaggaaaaattggtgtcattt |
2037835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 6816651 - 6816733
Alignment:
| Q |
8 |
gtcttatgttattttatcttattttagtaaactatatgaatatttcctttgttatattagagta-gaaaaatgggtgacattt |
89 |
Q |
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| T |
6816651 |
gtcttattttattttatcttatcttagcaaactttatgaatatatagtttattatattagagtaggaaaaattggtgacattt |
6816733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 44667449 - 44667503
Alignment:
| Q |
8 |
gtcttatgttattttatcttattttagtaaactatatgaatatttcctttgttat |
62 |
Q |
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| T |
44667449 |
gtcttattttattttatattattttagtaaactacatgaatatttactttattat |
44667503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 44667620 - 44667652
Alignment:
| Q |
145 |
ttcattactaaaaagtaggagatacaacttctt |
177 |
Q |
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| T |
44667620 |
ttcattactagaaagtaggagatacaacttctt |
44667652 |
T |
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