View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4588_high_1 (Length: 591)
Name: NF4588_high_1
Description: NF4588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4588_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 71; Significance: 7e-32; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 492 - 570
Target Start/End: Original strand, 3011498 - 3011576
Alignment:
| Q |
492 |
ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtg |
570 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3011498 |
ttctatggggatagaataaatgaatacaaagaggagttgaaaacaattggagtgatgttcaattgtgaggaagcatgtg |
3011576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 492 - 573
Target Start/End: Complemental strand, 2931269 - 2931188
Alignment:
| Q |
492 |
ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaat |
573 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
2931269 |
ttctatggagagagaataaatgagtacaaagaggaattgaaaacaattggagttatgttcaattgtgaggaagcatgtgaat |
2931188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 492 - 569
Target Start/End: Complemental strand, 37796770 - 37796693
Alignment:
| Q |
492 |
ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgt |
569 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||||| |||||||| |
|
|
| T |
37796770 |
ttctatggggatagaataaacaagtatgaagaggagttgaaaacaattggagtgatgtccagttgtgaggaagcatgt |
37796693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 492 - 568
Target Start/End: Complemental strand, 2921921 - 2921845
Alignment:
| Q |
492 |
ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatg |
568 |
Q |
| |
|
||||| ||||||| ||||||| |||| |||||||||||||||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
2921921 |
ttctacggggataaaataaataagtatgaagaggagttgaaaacaattggagtgatgtccagttgtgaggaagcatg |
2921845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 489
Target Start/End: Complemental strand, 2932038 - 2931991
Alignment:
| Q |
441 |
gaacaaaacatttggatggtgcagcaaaccagttttttatgccagaaag |
489 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
2932038 |
gaacaaaacatttagatg-tgcagcaaaccagttttttatgccagaaag |
2931991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 546
Target Start/End: Complemental strand, 2947922 - 2947868
Alignment:
| Q |
492 |
ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtga |
546 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| ||||| |||| | ||||||||| |
|
|
| T |
2947922 |
ttctatggggaaagaataaatgcgtacaaagaagagttaaaaagagttggagtga |
2947868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 492 - 571
Target Start/End: Original strand, 4915561 - 4915640
Alignment:
| Q |
492 |
ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtga |
571 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| |||| |||||||||| |
|
|
| T |
4915561 |
ttctatggggatagaataaataagtacaaagaggagttgaaaacagttggagtgatgttcgattatgaggaagcatgtga |
4915640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 492 - 571
Target Start/End: Original strand, 1505813 - 1505892
Alignment:
| Q |
492 |
ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtga |
571 |
Q |
| |
|
||||| ||| |||||||||||||||||| ||| |||||||||| | | ||||| ||||||| || |||| |||||||||| |
|
|
| T |
1505813 |
ttctacgggaatagaataaatgagtacacagaagagttgaaaatagtcggagttatgttcagttatgaggaagcatgtga |
1505892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 568
Target Start/End: Complemental strand, 28025768 - 28025692
Alignment:
| Q |
492 |
ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatg |
568 |
Q |
| |
|
|||||||||||||||||||| |||| |||| ||||||||||| | |||||||||| || ||||||| ||||||| |
|
|
| T |
28025768 |
ttctatggggatagaataaacaagtatgaagaagagttgaaaactgtaggagtgatgtccagttgtgaggaagcatg |
28025692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University