View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4588_low_10 (Length: 348)
Name: NF4588_low_10
Description: NF4588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4588_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 17772087 - 17772417
Alignment:
| Q |
1 |
caccgaatactgtcacggttgatgataatatcgaggatgataagtatggtttgaatgagccagtgacgaacatggcttctgttggtatgaaacatgagaa |
100 |
Q |
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| T |
17772087 |
caccgaatactgtcacggttgatgataatatcgaggatgataagtatggtttgaatgagccagtgacgaacatggcttctgttggtatgaaacatgagaa |
17772186 |
T |
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| Q |
101 |
tgaagatagaagtatctcagatggtcctgaatcaaaaccgattgcagcggttcatgagatgccagagcagcaaacaagctgtgataatggtttggaattg |
200 |
Q |
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| T |
17772187 |
tgaagatagaagtatctcagatggtcctgaatcaaaaccgattgcagcggttcatgagatgccagagcagcaaacaagctgtgataatggtttggaattg |
17772286 |
T |
|
| Q |
201 |
agtaatactcctctttacggtttctcgtcagttattggaaggagacaagaaatggaagatactattgttattaaacctcaactttttcaagtaccttcaa |
300 |
Q |
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| T |
17772287 |
agtaatactcctctttacggtttctcgtcagttattggaaggagacaagaaatggaagatactattgttattaaacctcaactttttcaagtaccttcaa |
17772386 |
T |
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| Q |
301 |
tgatgctaatggatgaccatgtgaatgaaaa |
331 |
Q |
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| T |
17772387 |
tgatgctaatggatgaccatgtgaatgaaaa |
17772417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 331
Target Start/End: Complemental strand, 52219286 - 52219207
Alignment:
| Q |
252 |
atggaagatactattgttattaaacctcaactttttcaagtaccttcaatgatgctaatggatgaccatgtgaatgaaaa |
331 |
Q |
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||||||||| |||||| | | |||||||| |||||||||| |||||| ||||||||||||||||||| |||||||||| |
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| T |
52219286 |
atggaagatgctattgctgtcaaacctcagttttttcaagtcccttcacagatgctaatggatgaccatttgaatgaaaa |
52219207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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