View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4588_low_12 (Length: 250)
Name: NF4588_low_12
Description: NF4588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4588_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 24300687 - 24300920
Alignment:
| Q |
1 |
tgacatgagcatgaaacaattagacgtttcaccacaagttcatacaaaaacattttgaaactcgtacaagttaaatttggagaaacaacgatgagaaaga |
100 |
Q |
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| T |
24300687 |
tgacatgattatgaaacaattagaagtatcaccactgattcatacaaaaacattttgaaactcgtacaatttacatttggaaaaacaacgacgagaaaga |
24300786 |
T |
|
| Q |
101 |
caataatgacaaacacctttccccactagcaaagtaatatttcaaacatgtgtcctataatcatgagttattcatgttctatggaacctattacaagtcc |
200 |
Q |
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||| ||||||| | ||||| | |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24300787 |
caacaatgacataagccttttctcactggcaaagtaatatttcagacatgtgtcctataatcatgagttattcatgttctatggaacctattacaagtcc |
24300886 |
T |
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| Q |
201 |
aatgtaccataagcacaaatcacttgctaaaagt |
234 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
24300887 |
aatgtaccgtaagcacaaatcacttgctaaaagt |
24300920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 25294847 - 25295043
Alignment:
| Q |
1 |
tgacatgagcatgaaacaattagacgtttcaccacaagttcatacaaaaacattttgaaactcgtacaagttaaatt-tggagaaacaacgatgagaaag |
99 |
Q |
| |
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||||||| ||||||||||||| || ||||||||| |||||| ||||||||||||||||||| ||||| | | ||| ||| ||||||| | ||||||| |
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| T |
25294847 |
tgacatgggcatgaaacaattcgagacttcaccacaggttcatgcaaaaacattttgaaactcatacaattaacattacggataaacaacaacgagaaag |
25294946 |
T |
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| Q |
100 |
acaataatgacaaacacctttccccactagcaaagtaatatttcaaacatgtgtcctataatca-tgagttattcatgttctatggaacctattacaa |
196 |
Q |
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|||| ||||||||| ||||| |||||| ||| ||| |||||||||| |||||||||| || ||| |||||||| |||||| ||| ||||||||| |
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| T |
25294947 |
acaacaatgacaaaagccttttcccacttgcagtgtataatttcaaacaattgtcctataaccattgacttattcatattctat-gaaactattacaa |
25295043 |
T |
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