View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4588_low_2 (Length: 527)

Name: NF4588_low_2
Description: NF4588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4588_low_2
NF4588_low_2
[»] chr2 (21 HSPs)
chr2 (351-508)||(25606195-25606353)
chr2 (146-223)||(38144016-38144093)
chr2 (104-225)||(26533278-26533398)
chr2 (104-220)||(26533579-26533695)
chr2 (147-223)||(44279303-44279379)
chr2 (104-212)||(31074227-31074334)
chr2 (103-191)||(8596463-8596550)
chr2 (226-308)||(25606411-25606493)
chr2 (150-223)||(27187238-27187311)
chr2 (150-223)||(27836780-27836853)
chr2 (150-223)||(27837052-27837125)
chr2 (175-223)||(27187487-27187535)
chr2 (175-223)||(27837301-27837349)
chr2 (101-223)||(44279006-44279128)
chr2 (12-83)||(28282805-28282876)
chr2 (226-308)||(38576885-38576967)
chr2 (225-310)||(9050072-9050157)
chr2 (9-58)||(16576254-16576303)
chr2 (186-223)||(27187002-27187039)
chr2 (186-223)||(27836544-27836581)
chr2 (226-310)||(28282693-28282777)
[»] chr1 (10 HSPs)
chr1 (101-223)||(32024952-32025073)
chr1 (101-223)||(32025248-32025369)
chr1 (102-223)||(32025544-32025664)
chr1 (146-223)||(9448665-9448742)
chr1 (153-223)||(31412441-31412511)
chr1 (9-78)||(10775149-10775218)
chr1 (146-223)||(51865810-51865887)
chr1 (9-58)||(46080977-46081026)
chr1 (146-223)||(4119117-4119194)
chr1 (9-54)||(52432671-52432716)
[»] scaffold0007 (1 HSPs)
scaffold0007 (102-223)||(262122-262242)
[»] chr6 (10 HSPs)
chr6 (104-223)||(30045448-30045566)
chr6 (146-223)||(1701922-1701999)
chr6 (146-223)||(32729553-32729630)
chr6 (8-77)||(32342587-32342656)
chr6 (150-218)||(1702205-1702273)
chr6 (15-58)||(20206481-20206524)
chr6 (15-58)||(22100504-22100547)
chr6 (152-217)||(28072126-28072191)
chr6 (146-188)||(29141559-29141601)
chr6 (8-57)||(32047181-32047230)
[»] chr7 (13 HSPs)
chr7 (103-223)||(8356210-8356329)
chr7 (146-223)||(3958388-3958465)
chr7 (101-223)||(23071746-23071867)
chr7 (152-223)||(23072348-23072419)
chr7 (104-223)||(13789497-13789615)
chr7 (146-223)||(17944567-17944644)
chr7 (147-223)||(23072052-23072128)
chr7 (146-223)||(3958094-3958170)
chr7 (249-305)||(32139020-32139076)
chr7 (146-221)||(37223838-37223913)
chr7 (272-306)||(22593566-22593600)
chr7 (12-58)||(29152350-29152396)
chr7 (17-65)||(22593597-22593645)
[»] scaffold0251 (1 HSPs)
scaffold0251 (101-223)||(12602-12723)
[»] chr4 (9 HSPs)
chr4 (146-223)||(19987941-19988018)
chr4 (146-223)||(19987647-19987724)
chr4 (146-223)||(8107455-8107532)
chr4 (146-207)||(7833796-7833857)
chr4 (150-223)||(38978715-38978788)
chr4 (147-223)||(8107176-8107252)
chr4 (226-310)||(25062362-25062446)
chr4 (155-223)||(18930785-18930853)
chr4 (10-58)||(25062496-25062544)
[»] chr5 (11 HSPs)
chr5 (103-223)||(10567341-10567460)
chr5 (146-223)||(36975928-36976005)
chr5 (104-219)||(15173456-15173570)
chr5 (146-201)||(39569958-39570013)
chr5 (146-219)||(22587007-22587080)
chr5 (10-65)||(22780196-22780251)
chr5 (13-75)||(14258902-14258964)
chr5 (182-223)||(9441302-9441343)
chr5 (146-223)||(36975239-36975316)
chr5 (147-223)||(10321615-10321691)
chr5 (10-58)||(17736775-17736823)
[»] chr8 (11 HSPs)
chr8 (146-223)||(34074293-34074370)
chr8 (146-223)||(34373638-34373715)
chr8 (146-219)||(34373934-34374007)
chr8 (226-308)||(29093581-29093663)
chr8 (146-223)||(15937851-15937928)
chr8 (9-58)||(32166655-32166704)
chr8 (153-223)||(9410528-9410598)
chr8 (173-223)||(22576677-22576727)
chr8 (146-223)||(21397239-21397316)
chr8 (146-223)||(21791732-21791809)
chr8 (9-65)||(12736053-12736109)
[»] chr3 (7 HSPs)
chr3 (171-225)||(7400835-7400889)
chr3 (161-213)||(13843672-13843724)
chr3 (104-223)||(3870769-3870887)
chr3 (146-223)||(19997105-19997182)
chr3 (9-65)||(42091811-42091867)
chr3 (245-305)||(2562969-2563029)
chr3 (10-58)||(54437812-54437860)


Alignment Details
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 351 - 508
Target Start/End: Complemental strand, 25606353 - 25606195
Alignment:
Q  351 tggtatttgagtgtaatctcatgtattttctttctagaatgtactcaaatataaatagttgtaaattcaactcacatttaatcctaataaacttacttta 450  Q
    |||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  25606353 tggtatttgagtgtaatctcgtgtattttcgatctagaatgtactcaaatataaatagttgtaaattcaactcacatttaatcccaataaacttaattta 25606254  T
Q  451 cataattaattttgtcaccgtagaataaattgtgcat-gtttaaaatcgcattgaattt 508  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  25606253 cataattaattttgtcaccgtagaataaattgtgcatcttttaaaatcgcattgaattt 25606195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 38144093 - 38144016
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||    
T  38144093 ctagtccaataggtgggagaacctcaaggcttaagtaccacatcaagcactttgatatactcgatgtgggactcctaa 38144016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 26533398 - 26533278
Alignment:
Q  104 tgttaggacttaagcccatggtgagagcccaacctnnnnnnnctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatct 203  Q
    ||||||||||||||||||||  ||||||||||||        |||||||| ||||||||||||||||| || ||||| ||||||||||| ||||||||||    
T  26533398 tgttaggacttaagcccatgaggagagcccaacc-caaaagactagtccattaggtgggagaacctcatggtttaagtaccacatcaagcactttgatct 26533300  T
Q  204 actcgatgtgggactcctaata 225  Q
    ||||||||||||||||||||||    
T  26533299 actcgatgtgggactcctaata 26533278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 26533695 - 26533579
Alignment:
Q  104 tgttaggacttaagcccatggtgagagcccaacctnnnnnnnctagtccaataggtgggagaacctcaaggctt-aagcaccacatcaagtactttgatc 202  Q
    ||||||||||||||||||||  ||||||||||||        |||||||||||||||||||||||||| || || ||| ||||||||||| |||||||||    
T  26533695 tgttaggacttaagcccatgaggagagcccaacc-caaaagactagtccaataggtgggagaacctcatggttttaagtaccacatcaagcactttgatc 26533597  T
Q  203 tactcgatgtgggactcc 220  Q
    ||||||||||||||||||    
T  26533596 tactcgatgtgggactcc 26533579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 44279379 - 44279303
Alignment:
Q  147 tagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    ||||| |||||||||||||||||||||| ||||| ||| ||||||  ||||||||||||| ||||||||||||||||    
T  44279379 tagtctaataggtgggagaacctcaaggtttaagtaccgcatcaaacactttgatctacttgatgtgggactcctaa 44279303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 31074334 - 31074227
Alignment:
Q  104 tgttaggacttaagcccatggtgagagcccaacctnnnnnnnctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatct 203  Q
    ||||||||||||||||||||  ||||||||||||        |||||||||||| |  |||||||||| |||||||| |||||||||| |||||||||||    
T  31074334 tgttaggacttaagcccatgaggagagcccaacc-caaaagactagtccaatagatatgagaacctcatggcttaagtaccacatcaaatactttgatct 31074236  T
Q  204 actcgatgt 212  Q
    |||||||||    
T  31074235 actcgatgt 31074227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 103 - 191
Target Start/End: Original strand, 8596463 - 8596550
Alignment:
Q  103 ttgttaggacttaagcccatggtgagagcccaacctnnnnnnnctagtccaataggtgggagaacctcaaggcttaagcaccacatcaa 191  Q
    ||||||||||||||||||| |  ||||||||||||        ||||||||||||||||||||||||||||||||||| ||||||||||    
T  8596463 ttgttaggacttaagcccacgaggagagcccaacc-caaaaaactagtccaataggtgggagaacctcaaggcttaagtaccacatcaa 8596550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 25606493 - 25606411
Alignment:
Q  226 gtaatttactcttaataacaagtatgattagattatggaacaaataagatagatatcatatgttgaatgaaatagatgaagaa 308  Q
    ||||||||| |||||||||||||| |||| | ||||||||| ||  ||||  |||||||||||||||||||| ||||||||||    
T  25606493 gtaatttacccttaataacaagtaggattcgtttatggaacgaaggagatgtatatcatatgttgaatgaaacagatgaagaa 25606411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 27187238 - 27187311
Alignment:
Q  150 tccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    ||||||||||| || ||||||| | |||||| | ||||||||||| |||||||||||||||||| |||||||||    
T  27187238 tccaataggtgagaaaacctcatgacttaagtatcacatcaagtagtttgatctactcgatgtgagactcctaa 27187311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 27836780 - 27836853
Alignment:
Q  150 tccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    ||||||||||| || ||||||| | |||||| | ||||||||||| |||||||||||||||||| |||||||||    
T  27836780 tccaataggtgagaaaacctcatgacttaagtatcacatcaagtagtttgatctactcgatgtgagactcctaa 27836853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 27837052 - 27837125
Alignment:
Q  150 tccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    ||||||||||| || ||||||| | |||||| | ||||||||||| |||||||||||||||||| |||||||||    
T  27837052 tccaataggtgagaaaacctcatgacttaagtatcacatcaagtagtttgatctactcgatgtgagactcctaa 27837125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 27187487 - 27187535
Alignment:
Q  175 cttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  27187487 cttaagtaccacatcaagcactttgatctactcgatgtgggactcctaa 27187535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 27837301 - 27837349
Alignment:
Q  175 cttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  27837301 cttaagtaccacatcaagcactttgatctactcgatgtgggactcctaa 27837349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 223
Target Start/End: Complemental strand, 44279128 - 44279006
Alignment:
Q  101 aattgttaggacttaagcccatggtgagagcccaacctnnnnnnnctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttga 200  Q
    |||||||||||||||| ||| ||  ||||||||||||        ||| |||||||||||||||||||||| || ||||| |||||||||   ||| |||    
T  44279128 aattgttaggacttaaacccgtgaggagagcccaacccaaaaagactactccaataggtgggagaacctcatggtttaagtaccacatcatacactatga 44279029  T
Q  201 tctactcgatgtgggactcctaa 223  Q
    |||| | |||||| |||||||||    
T  44279028 tctatttgatgtgagactcctaa 44279006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 28282876 - 28282805
Alignment:
Q  12 atgaagaagtttgatgttattgacatgaaaatgctaattgattgtaatgaaaaattaaaatggtgaaaccta 83  Q
    ||||| ||||||||| |||| || ||||||||| |||||||||||||  |||||| ||||||||||| ||||    
T  28282876 atgaaaaagtttgatattatggagatgaaaatgataattgattgtaagaaaaaatcaaaatggtgaagccta 28282805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 38576885 - 38576967
Alignment:
Q  226 gtaatttactcttaataacaagtatgattagattatggaacaaataagatagatatcatatgttgaatgaaatagatgaagaa 308  Q
    ||||||||||| |||| |||| ||||||| |||||||| || ||  |||| || |||| ||||||||||||| ||||||||||    
T  38576885 gtaatttactcctaatgacaaatatgatttgattatggtacgaaagagatggaaatcacatgttgaatgaaagagatgaagaa 38576967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 9050072 - 9050157
Alignment:
Q  225 agtaatttactcttaataacaagtatgattagattatggaacaaataagatagatatcatatgttgaatgaaatagatgaagaagt 310  Q
    |||||||||| |||||| ||||| |||||| |||| || ||| ||| |||| || ||||||||||||||||   ||||||||||||    
T  9050072 agtaatttacccttaatgacaagcatgattcgattttgtaacgaatgagatggagatcatatgttgaatgatggagatgaagaagt 9050157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 16576303 - 16576254
Alignment:
Q  9 gagatgaagaagtttgatgttattgacatgaaaatgctaattgattgtaa 58  Q
    ||||||||||||||||||||| |||| | ||||||| |||||||||||||    
T  16576303 gagatgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaa 16576254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 27187002 - 27187039
Alignment:
Q  186 catcaagtactttgatctactcgatgtgggactcctaa 223  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  27187002 catcaagcactttgatctactcgatgtgagactcctaa 27187039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 27836544 - 27836581
Alignment:
Q  186 catcaagtactttgatctactcgatgtgggactcctaa 223  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  27836544 catcaagcactttgatctactcgatgtgagactcctaa 27836581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 310
Target Start/End: Complemental strand, 28282777 - 28282693
Alignment:
Q  226 gtaatttactcttaataacaagtatgattagattatggaacaaataagatagatatcatatgttgaatgaaatagatgaagaagt 310  Q
    ||||||||| | ||||||||||||  ||| ||||||||||| ||| |||| || |||| || |||||||||  |||| |||||||    
T  28282777 gtaatttacccctaataacaagtaaaatttgattatggaacgaatgagatggagatcacatattgaatgaagcagataaagaagt 28282693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 101 - 223
Target Start/End: Complemental strand, 32025073 - 32024952
Alignment:
Q  101 aattgttaggacttaagcccatggtgagagcccaacctnnnnnnnctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttga 200  Q
    |||||||||||||||||||||||  ||||||||||||        ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  32025073 aattgttaggacttaagcccatgaggagagcccaacc-caaaaaactagtccaataggtgggagaacctcaaggcttaagtaccacatcaagcactttga 32024975  T
Q  201 tctactcgatgtgggactcctaa 223  Q
    | |||||||||||||||||||||    
T  32024974 tatactcgatgtgggactcctaa 32024952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 101 - 223
Target Start/End: Complemental strand, 32025369 - 32025248
Alignment:
Q  101 aattgttaggacttaagcccatggtgagagcccaacctnnnnnnnctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttga 200  Q
    |||||||||||||||||||||||  ||||||||||||        ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  32025369 aattgttaggacttaagcccatgaggagagcccaacc-caaaaaactagtccaataggtgggagaacctcaaggcttaagtaccacatcaagcactttga 32025271  T
Q  201 tctactcgatgtgggactcctaa 223  Q
    | |||||||||||||||||||||    
T  32025270 tatactcgatgtgggactcctaa 32025248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 32025664 - 32025544
Alignment:
Q  102 attgttaggacttaagcccatggtgagagcccaacctnnnnnnnctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgat 201  Q
    ||||||||||||||||||||||  ||||||||||||        ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  32025664 attgttaggacttaagcccatgaggagagcccaacc-caaaaaactagtccaataggtgggagaacctcaaggcttaagtaccacatcaagcactttgat 32025566  T
Q  202 ctactcgatgtgggactcctaa 223  Q
     |||||||||||||||||||||    
T  32025565 atactcgatgtgggactcctaa 32025544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 9448665 - 9448742
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||    
T  9448665 ctagtccaataggtgggagaacctcaaggcttaagtaccacatcaagcactttgatatactcgatgtgggactcctaa 9448742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 31412441 - 31412511
Alignment:
Q  153 aataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    ||||||||||||||||||| |||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  31412441 aataggtgggagaacctcacggcttaagtaccacatcaagcattttgatctactcgatgtgggactcctaa 31412511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 10775218 - 10775149
Alignment:
Q  9 gagatgaagaagtttgatgttattgacatgaaaatgctaattgattgtaatgaaaaattaaaatggtgaa 78  Q
    ||||||||||||||||||||| || | ||||||||| ||||||||| |||  ||||| ||||||||||||    
T  10775218 gagatgaagaagtttgatgttcttaagatgaaaatggtaattgattctaagaaaaaactaaaatggtgaa 10775149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 51865887 - 51865810
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    |||||| ||||||||||||||| ||| | |||||| ||||||||||  ||| || ||||||| |||||||||||||||    
T  51865887 ctagtctaataggtgggagaacttcatgacttaagtaccacatcaaacactatgttctactctatgtgggactcctaa 51865810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 46081026 - 46080977
Alignment:
Q  9 gagatgaagaagtttgatgttattgacatgaaaatgctaattgattgtaa 58  Q
    ||||||||||||||| ||||| |||| ||||||||| |||||||||||||    
T  46081026 gagatgaagaagtttaatgttcttgagatgaaaatggtaattgattgtaa 46080977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 4119194 - 4119117
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    |||||||| | ||||| ||| ||||| |||||||| ||||  || |  ||||| ||||||||||||||||||||||||    
T  4119194 ctagtccattcggtggcagagcctcatggcttaagtaccatgtcgaacacttttatctactcgatgtgggactcctaa 4119117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 52432716 - 52432671
Alignment:
Q  9 gagatgaagaagtttgatgttattgacatgaaaatgctaattgatt 54  Q
    ||||||||||||||| ||||| |||| ||||||||| |||||||||    
T  52432716 gagatgaagaagtttaatgttcttgagatgaaaatggtaattgatt 52432671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 262242 - 262122
Alignment:
Q  102 attgttaggacttaagcccatggtgagagcccaacctnnnnnnnctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgat 201  Q
    ||||||||||||||||||||||  ||||||||||||        ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  262242 attgttaggacttaagcccatgaggagagcccaacc-caaaaaactagtccaataggtgggagaacctcaaggcttaagtaccacatcaagcactttgat 262144  T
Q  202 ctactcgatgtgggactcctaa 223  Q
     |||||||||||||||||||||    
T  262143 atactcgatgtgggactcctaa 262122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 30045566 - 30045448
Alignment:
Q  104 tgttaggacttaagcccatggtgagagcccaacctnnnnnnnctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatct 203  Q
    ||||||||||||||||||||  ||||||||||||        ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |    
T  30045566 tgttaggacttaagcccatgaggagagcccaacc-caaaaaactagtccaataggtgggagaacctcaaggcttaagtaccacatcaagcactttgatat 30045468  T
Q  204 actcgatgtgggactcctaa 223  Q
    ||||||||||||||||||||    
T  30045467 actcgatgtgggactcctaa 30045448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 1701922 - 1701999
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    ||||||||||| |||||||||||||  |||||||| ||||||||||||| |||||||||||||||||| |||||||||    
T  1701922 ctagtccaataagtgggagaacctcttggcttaagtaccacatcaagtattttgatctactcgatgtgagactcctaa 1701999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 32729630 - 32729553
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    |||||||||||||||||||||| ||| | |||||| | ||||||||| | |||||||||||||||||| |||||||||    
T  32729630 ctagtccaataggtgggagaacttcatgacttaagtatcacatcaagcagtttgatctactcgatgtgagactcctaa 32729553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 32342656 - 32342587
Alignment:
Q  8 tgagatgaagaagtttgatgttattgacatgaaaatgctaattgattgtaatgaaaaattaaaatggtga 77  Q
    ||||||||| |||||||||||| |||| ||||||||| |||||||||||||  ||||| |||||||||||    
T  32342656 tgagatgaaaaagtttgatgtttttgagatgaaaatgataattgattgtaagaaaaaactaaaatggtga 32342587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 1702205 - 1702273
Alignment:
Q  150 tccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggact 218  Q
    |||||||| | ||||||||||| |||||||| ||||||||||  | |||||||||||||||||||||||    
T  1702205 tccaatagataggagaacctcatggcttaagtaccacatcaaacattttgatctactcgatgtgggact 1702273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 20206481 - 20206524
Alignment:
Q  15 aagaagtttgatgttattgacatgaaaatgctaattgattgtaa 58  Q
    |||||||||||||||||||| ||||||||| |||||||||||||    
T  20206481 aagaagtttgatgttattgagatgaaaatgataattgattgtaa 20206524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 22100504 - 22100547
Alignment:
Q  15 aagaagtttgatgttattgacatgaaaatgctaattgattgtaa 58  Q
    |||||||||||||||||||| ||||||||| |||||||||||||    
T  22100504 aagaagtttgatgttattgagatgaaaatgataattgattgtaa 22100547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 28072126 - 28072191
Alignment:
Q  152 caataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggac 217  Q
    ||||||||||||||||||||  ||||||| ||||||||||  |||||  |||||| ||||||||||    
T  28072126 caataggtgggagaacctcatagcttaagtaccacatcaatcacttttttctacttgatgtgggac 28072191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 29141601 - 29141559
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacat 188  Q
    |||||||||||||||||||||||||| || ||||| |||||||    
T  29141601 ctagtccaataggtgggagaacctcatggtttaagtaccacat 29141559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 32047230 - 32047181
Alignment:
Q  8 tgagatgaagaagtttgatgttattgacatgaaaatgctaattgattgta 57  Q
    |||||||||||||||||||||| |||| ||||||||| ||| ||| ||||    
T  32047230 tgagatgaagaagtttgatgttcttgagatgaaaatggtaaatgaatgta 32047181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 8356210 - 8356329
Alignment:
Q  103 ttgttaggacttaagcccatggtgagagcccaacctnnnnnnnctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatc 202  Q
    |||||||||||||||||||||  ||||||||||||        ||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||     
T  8356210 ttgttaggacttaagcccatgaggagagcccaacc-caaaaaactagtcctataggtgggagaacctcaaggcttaagtaccacatcaagcactttgata 8356308  T
Q  203 tactcgatgtgggactcctaa 223  Q
    |||||||||||||||||||||    
T  8356309 tactcgatgtgggactcctaa 8356329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 3958388 - 3958465
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    ||||||| |||| ||||||||||||| | |||||| |||||||||||||||||||||||||||||||| |||||||||    
T  3958388 ctagtcctatagatgggagaacctcatgacttaagtaccacatcaagtactttgatctactcgatgtgagactcctaa 3958465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 101 - 223
Target Start/End: Complemental strand, 23071867 - 23071746
Alignment:
Q  101 aattgttaggacttaagcccatggtgagagcccaacctnnnnnnnctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttga 200  Q
    ||||||||||| ||||||||||| |||||||||||||        |||||||||||||||||||||| ||| || ||||| ||||||||||  | |||||    
T  23071867 aattgttaggatttaagcccatgatgagagcccaacc-caaaagactagtccaataggtgggagaacttcatggtttaagtaccacatcaaacattttga 23071769  T
Q  201 tctactcgatgtgggactcctaa 223  Q
    ||||||||||| |||||||||||    
T  23071768 tctactcgatgagggactcctaa 23071746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 23072419 - 23072348
Alignment:
Q  152 caataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    |||||||||||||||| ||| || ||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  23072419 caataggtgggagaacttcatggtttaagtaccacatcaagcattttgatctactcgatgtgggactcctaa 23072348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 104 - 223
Target Start/End: Original strand, 13789497 - 13789615
Alignment:
Q  104 tgttaggacttaagcccatggtgagagcccaacctnnnnnnnctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatct 203  Q
    |||||||||||||||||| |  |||||||||||||       |||||||||||||||||||| || || |||||||| ||||||||||| ||||| |  |    
T  13789497 tgttaggacttaagcccaagaggagagcccaacctaaaaaa-ctagtccaataggtgggagagccccatggcttaagtaccacatcaagcacttttagtt 13789595  T
Q  204 actcgatgtgggactcctaa 223  Q
    || |||||||||||||||||    
T  13789596 acccgatgtgggactcctaa 13789615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 17944644 - 17944567
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    |||||||| ||| ||||||| ||||| |||||||| |||||||| || ||||| ||||||||||||||||||||||||    
T  17944644 ctagtccattagatgggagagcctcatggcttaagtaccacatcgagcacttttatctactcgatgtgggactcctaa 17944567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 23072128 - 23072052
Alignment:
Q  147 tagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    ||||||||||||||||||||| ||| || ||||| | ||||| ||| | ||||||||||||||||||||||||||||    
T  23072128 tagtccaataggtgggagaacttcatggtttaagtatcacattaagcattttgatctactcgatgtgggactcctaa 23072052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 3958094 - 3958170
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    ||||||| ||||||||||||||||||   |||||| | |||||||||||| ||||||||||||| |||||||||||||    
T  3958094 ctagtcctataggtgggagaacctcataacttaagtatcacatcaagtac-ttgatctactcgacgtgggactcctaa 3958170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 32139020 - 32139076
Alignment:
Q  249 atgattagattatggaacaaataagatagatatcatatgttgaatgaaatagatgaa 305  Q
    |||||| ||||||||||| ||||  ||| ||||||||||||||||| ||||||||||    
T  32139020 atgatttgattatggaacgaatataatacatatcatatgttgaatggaatagatgaa 32139076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 37223913 - 37223838
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcct 221  Q
    |||||||| |||||||||||  |||| |||||||| ||| |||  || ||||| |||||||| |||||||||||||    
T  37223913 ctagtccattaggtgggagagtctcatggcttaagtacctcattgagcacttttatctactcaatgtgggactcct 37223838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 306
Target Start/End: Original strand, 22593566 - 22593600
Alignment:
Q  272 agatagatatcatatgttgaatgaaatagatgaag 306  Q
    |||||||||||| ||||||||||||||||||||||    
T  22593566 agatagatatcacatgttgaatgaaatagatgaag 22593600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 29152350 - 29152396
Alignment:
Q  12 atgaagaagtttgatgttattgacatgaaaatgctaattgattgtaa 58  Q
    ||||||||||||||||||||||| ||||||||  ||| |||||||||    
T  29152350 atgaagaagtttgatgttattgagatgaaaatagtaactgattgtaa 29152396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 22593597 - 22593645
Alignment:
Q  17 gaagtttgatgttattgacatgaaaatgctaattgattgtaatgaaaaa 65  Q
    ||||||||||||| |||| |||||||||  |||||||||||| ||||||    
T  22593597 gaagtttgatgttcttgagatgaaaatgacaattgattgtaaagaaaaa 22593645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 101 - 223
Target Start/End: Complemental strand, 12723 - 12602
Alignment:
Q  101 aattgttaggacttaagcccatggtgagagcccaacctnnnnnnnctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttga 200  Q
    |||||||||||| ||||||||||  ||||||||||||        |||||||||||||||| ||||||||| |||||||| | ||||||||| |||||||    
T  12723 aattgttaggacctaagcccatgaggagagcccaacc-caaaagactagtccaataggtggaagaacctcatggcttaagtaacacatcaagcactttga 12625  T
Q  201 tctactcgatgtgggactcctaa 223  Q
    |||||||||||||||||||||||    
T  12624 tctactcgatgtgggactcctaa 12602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 19988018 - 19987941
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  19988018 ctagtccaataggtgggagaacctcatggcttaagtaccacatcaagcattttgatctactcgatgtgggactcctaa 19987941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 19987724 - 19987647
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||  | ||||||||||||||||||||||||||||    
T  19987724 ctagtccaataggtgggagaacctcatggcttaagtaccacatcaaacattttgatctactcgatgtgggactcctaa 19987647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 8107455 - 8107532
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    ||||| |||| | |||||||||||||  ||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  8107455 ctagttcaatggatgggagaacctcatagcttaagtaccacatcaagcactttgatctactcgatgtgggactcctaa 8107532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 7833796 - 7833857
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactc 207  Q
    |||||||| ||||||||||| ||||| | |||||| ||||||||||| ||||| ||||||||    
T  7833796 ctagtccattaggtgggagagcctcatgacttaagtaccacatcaagcacttttatctactc 7833857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 38978788 - 38978715
Alignment:
Q  150 tccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    |||| ||||||| ||| ||||| || ||||| ||||||||||  ||||| |||||||| |||||||||||||||    
T  38978788 tccattaggtggaagagcctcatggtttaagtaccacatcaaacacttttatctactccatgtgggactcctaa 38978715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 8107176 - 8107252
Alignment:
Q  147 tagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    ||||||||| ||||||||||| ||| |||||||| |||  |||||  |||||||| |||| ||||||||||| ||||    
T  8107176 tagtccaatgggtgggagaacatcatggcttaagtaccggatcaaacactttgatatacttgatgtgggacttctaa 8107252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 310
Target Start/End: Complemental strand, 25062446 - 25062362
Alignment:
Q  226 gtaatttactcttaataacaagtatgattagattatggaacaaataagatagatatcatatgttgaatgaaatagatgaagaagt 310  Q
    ||||||||| | |||||||||||| |||| ||||||||||||||  ||||  | |||| ||||| ||||||  ||||||||||||    
T  25062446 gtaatttacccctaataacaagtaggatttgattatggaacaaaggagatgaagatcacatgtttaatgaagcagatgaagaagt 25062362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 18930853 - 18930785
Alignment:
Q  155 taggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    ||||||| |||  |||| || ||||| ||||||||||||||||| || || ||||||| ||||||||||    
T  18930853 taggtggaagagtctcatggtttaagtaccacatcaagtacttttatttagtcgatgtaggactcctaa 18930785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 25062544 - 25062496
Alignment:
Q  10 agatgaagaagtttgatgttattgacatgaaaatgctaattgattgtaa 58  Q
    ||||||||||||||||| || |||| ||||||| | |||||||||||||    
T  25062544 agatgaagaagtttgatattcttgagatgaaaacggtaattgattgtaa 25062496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 10567460 - 10567341
Alignment:
Q  103 ttgttaggacttaagcccatggtgagagcccaacctnnnnnnnctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatc 202  Q
    |||||||||||||||||||||  ||||||||||||        ||||| |||||||||||||||||||| | |||||| | ||||||||| ||||||||     
T  10567460 ttgttaggacttaagcccatgaggagagcccaacc-caaaagactagtgcaataggtgggagaacctcatgccttaagtatcacatcaagcactttgata 10567362  T
Q  203 tactcgatgtgggactcctaa 223  Q
    ||||| |||||||||||||||    
T  10567361 tactcaatgtgggactcctaa 10567341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 36976005 - 36975928
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    ||||||||| |||||||||| ||| | | |||||  ||||||||||  ||||||||||||||||||||||||||||||    
T  36976005 ctagtccaacaggtgggagagccttatgacttaaataccacatcaaacactttgatctactcgatgtgggactcctaa 36975928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 15173456 - 15173570
Alignment:
Q  104 tgttaggacttaagcccatggtgagagcccaacctnnnnnnnctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatct 203  Q
    ||||||||||||||||||||  ||||||||||||        ||||||||| |||||||||| ||||| || ||||| ||||||||||| ||||| | ||    
T  15173456 tgttaggacttaagcccatgaggagagcccaacc-caaaagactagtccaaaaggtgggagagcctcatgggttaagtaccacatcaagcacttttagct 15173554  T
Q  204 actcgatgtgggactc 219  Q
    || || ||||||||||    
T  15173555 acccggtgtgggactc 15173570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 39569958 - 39570013
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgat 201  Q
    |||||||||||||||| |||||||||||| ||||| || |||||||| ||||||||    
T  39569958 ctagtccaataggtggaagaacctcaaggtttaagtactacatcaagcactttgat 39570013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 22587007 - 22587080
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactc 219  Q
    ||||||||||||||| |||| ||||| |||||||| || |||||||  ||||| |  |||||||||||||||||    
T  22587007 ctagtccaataggtgtgagagcctcatggcttaagtactacatcaaacacttttagttactcgatgtgggactc 22587080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 22780196 - 22780251
Alignment:
Q  10 agatgaagaagtttgatgttattgacatgaaaatgctaattgattgtaatgaaaaa 65  Q
    ||||||| ||||||||||||||||| || |||||| ||| |||||||||| |||||    
T  22780196 agatgaaaaagtttgatgttattgaaataaaaatggtaactgattgtaataaaaaa 22780251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 14258902 - 14258964
Alignment:
Q  13 tgaagaagtttgatgttattgacatgaaaatgctaattgattgtaatgaaaaattaaaatggt 75  Q
    |||| |||||||||||| |||| ||||||||| ||| | ||| |||| |||||||||||||||    
T  14258902 tgaaaaagtttgatgtttttgagatgaaaatgataaataattataataaaaaattaaaatggt 14258964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 9441302 - 9441343
Alignment:
Q  182 accacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    |||||||||||||||||||| || ||||||||||||| ||||    
T  9441302 accacatcaagtactttgatataatcgatgtgggacttctaa 9441343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 36975316 - 36975239
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    ||||| |||||| ||||||| ||| | | |||||  || |||||||  ||||| ||||||||||||||||||||||||    
T  36975316 ctagttcaatagatgggagagccttatgacttaaatactacatcaaacactttaatctactcgatgtgggactcctaa 36975239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 10321615 - 10321691
Alignment:
Q  147 tagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    |||||||||||||  |||| ||||| |||||||| ||||||||||  ||||| || ||   ||||||||||||||||    
T  10321615 tagtccaataggtaagagagcctcatggcttaagtaccacatcaaacacttttatttatctgatgtgggactcctaa 10321691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 17736775 - 17736823
Alignment:
Q  10 agatgaagaagtttgatgttattgacatgaaaatgctaattgattgtaa 58  Q
    |||||||||||||| || ||||||| ||||||||| |||||| ||||||    
T  17736775 agatgaagaagtttaatattattgagatgaaaatggtaattggttgtaa 17736823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 34074370 - 34074293
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    |||||||||||||||||||| ||||| | |||||| | ||||||||||| |||||||||||||||||| || ||||||    
T  34074370 ctagtccaataggtgggagagcctcatgccttaagtatcacatcaagtattttgatctactcgatgtgagaatcctaa 34074293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 34373638 - 34373715
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    |||||||||||||||||||||||||| | |||||| || |||||||| ||||| |||||||||||||| || ||||||    
T  34373638 ctagtccaataggtgggagaacctcacgacttaagtactacatcaagcactttaatctactcgatgtgagagtcctaa 34373715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 34373934 - 34374007
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactc 219  Q
    ||||||||||| || ||||||||||| |||||||| ||||||||||| ||||| ||||||||||| || |||||    
T  34373934 ctagtccaatatgtaggagaacctcacggcttaagtaccacatcaagcactttaatctactcgatatgagactc 34374007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 29093663 - 29093581
Alignment:
Q  226 gtaatttactcttaataacaagtatgattagattatggaacaaataagatagatatcatatgttgaatgaaatagatgaagaa 308  Q
    ||||||||| || |||| ||||||||||| ||||||||||| ||  |||| || |||| ||||||||||||  ||||||||||    
T  29093663 gtaatttaccctcaataccaagtatgatttgattatggaacgaaagagatggagatcacatgttgaatgaaggagatgaagaa 29093581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 15937851 - 15937928
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    |||||||| |||||||||||  |||| |||||||| ||||||||||| | ||| || ||| |||||||||||| ||||    
T  15937851 ctagtccattaggtgggagagactcatggcttaagtaccacatcaagcaattttatatacccgatgtgggacttctaa 15937928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 32166655 - 32166704
Alignment:
Q  9 gagatgaagaagtttgatgttattgacatgaaaatgctaattgattgtaa 58  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||| ||||    
T  32166655 gagatgaagaagtttgatgttcttgagatgaaaatgataattgatagtaa 32166704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 9410598 - 9410528
Alignment:
Q  153 aataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    ||||| ||||||||||||| || ||||| |  |||||||  |||||||||||||||||||| || ||||||    
T  9410598 aatagatgggagaacctcatggtttaagtattacatcaaacactttgatctactcgatgtgagattcctaa 9410528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 22576677 - 22576727
Alignment:
Q  173 ggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    |||||||  ||||||||||| | ||| ||||||||||||||||||||||||    
T  22576677 ggcttaactaccacatcaagcatttttatctactcgatgtgggactcctaa 22576727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 21397316 - 21397239
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    |||||||| ||||||||||| || |  || ||||  ||||||||||  ||||| |||||||||| |||||||||||||    
T  21397316 ctagtccattaggtgggagagccccgtggtttaaataccacatcaatcacttttatctactcgacgtgggactcctaa 21397239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 21791809 - 21791732
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    |||||||| ||||||||||| || |  || ||||  ||||||||||  ||||| |||||||||| |||||||||||||    
T  21791809 ctagtccattaggtgggagagccccgtggtttaaataccacatcaatcacttttatctactcgacgtgggactcctaa 21791732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 12736109 - 12736053
Alignment:
Q  9 gagatgaagaagtttgatgttattgacatgaaaatgctaattgattgtaatgaaaaa 65  Q
    |||||||||||||||||||||||| | ||| ||||| ||| | ||||||| ||||||    
T  12736109 gagatgaagaagtttgatgttattaagatggaaatggtaactaattgtaaggaaaaa 12736053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 7400889 - 7400835
Alignment:
Q  171 aaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaata 225  Q
    |||||||||| ||||||||||  |||||||| |||||||||||||||||||||||    
T  7400889 aaggcttaagtaccacatcaaacactttgatatactcgatgtgggactcctaata 7400835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 13843672 - 13843724
Alignment:
Q  161 ggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtg 213  Q
    ||||||||||| |||||||| ||||||| ||| ||||||||||||||||||||    
T  13843672 ggagaacctcatggcttaagtaccacattaagcactttgatctactcgatgtg 13843724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 223
Target Start/End: Original strand, 3870769 - 3870887
Alignment:
Q  104 tgttaggacttaagcccatggtgagagcccaacctnnnnnnnctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatct 203  Q
    ||||||||||||||||||||  ||||||||||||        |||||||||  ||||||||| ||||   ||||||| ||||||||||| | ||  ||||    
T  3870769 tgttaggacttaagcccatgaggagagcccaacc-caaaagactagtccaaatggtgggagagcctcgtagcttaagtaccacatcaagcatttaaatct 3870867  T
Q  204 actcgatgtgggactcctaa 223  Q
    |||||||||| |||||||||    
T  3870868 actcgatgtgagactcctaa 3870887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 19997105 - 19997182
Alignment:
Q  146 ctagtccaataggtgggagaacctcaaggcttaagcaccacatcaagtactttgatctactcgatgtgggactcctaa 223  Q
    |||||| |||||||||||||| || | | |||||| ||||||||||| | |||||| ||||||||||| || ||||||    
T  19997105 ctagtctaataggtgggagaatcttaggacttaagtaccacatcaagcattttgatatactcgatgtgagattcctaa 19997182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 42091811 - 42091867
Alignment:
Q  9 gagatgaagaagtttgatgttattgacatgaaaatgctaattgattgtaatgaaaaa 65  Q
    |||||||| |||||||||||| |||| ||||||||| ||||| ||||||| ||||||    
T  42091811 gagatgaaaaagtttgatgtttttgagatgaaaatgataattaattgtaaggaaaaa 42091867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 2563029 - 2562969
Alignment:
Q  245 aagtatgattagattatggaacaaataagatagatatcatatgttgaatgaaatagatgaa 305  Q
    |||||||||| |||| || ||||||| | ||||| |||| ||||||||||||| |||||||    
T  2563029 aagtatgattcgattctgaaacaaatgatatagagatcacatgttgaatgaaagagatgaa 2562969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 54437860 - 54437812
Alignment:
Q  10 agatgaagaagtttgatgttattgacatgaaaatgctaattgattgtaa 58  Q
    |||||||||||||||||||| |||| || |||||| ||| |||||||||    
T  54437860 agatgaagaagtttgatgtttttgagattaaaatggtaactgattgtaa 54437812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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