View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4588_low_4 (Length: 446)
Name: NF4588_low_4
Description: NF4588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4588_low_4 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Complemental strand, 1606545 - 1606126
Alignment:
| Q |
18 |
atatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatctatggcaccgtagacttcatctttggcaatgccg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606545 |
atatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatctatggcaccgtagacttcatctttggcaatgccg |
1606446 |
T |
|
| Q |
118 |
cagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606445 |
cagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacac |
1606346 |
T |
|
| Q |
218 |
tggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
1606345 |
tggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggcaggccttggcaacaatat |
1606246 |
T |
|
| Q |
318 |
tcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtctccatggggtgacactgattttgctcaagacacattgtatt |
417 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1606245 |
tcaagagttatggtgatgaaaactttcatggacactttagtaagccccctgggttggtctccatggggtgacactgattttgctcaagacacattgtatt |
1606146 |
T |
|
| Q |
418 |
atggagagtatgagaattat |
437 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
1606145 |
atggagagtatgagaattat |
1606126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Complemental strand, 1629843 - 1629424
Alignment:
| Q |
18 |
atatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatctatggcaccgtagacttcatctttggcaatgccg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1629843 |
atatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatctatggcaccgtagacttcatctttggcaacgccg |
1629744 |
T |
|
| Q |
118 |
cagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacac |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1629743 |
cagtggtattccaaaattgtaacattttcgcaagaaagcctttagatggccaagcaaacatgatcactgcccaaggtcgaggtgacccattccaaaacac |
1629644 |
T |
|
| Q |
218 |
tggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
1629643 |
tggaatttcattccacaattgtcaaattagggctgcatcagatctaaaacctgttgttgacaagtacaaaaccttcttgggcagaccttggcaacaatat |
1629544 |
T |
|
| Q |
318 |
tcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtctccatggggtgacactgattttgctcaagacacattgtatt |
417 |
Q |
| |
|
|| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1629543 |
tcaagagtaatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacactgattttgctcaagacacattgtatt |
1629444 |
T |
|
| Q |
418 |
atggagagtatgagaattat |
437 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
1629443 |
atggagagtatgagaattat |
1629424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 437
Target Start/End: Original strand, 10820853 - 10821274
Alignment:
| Q |
16 |
caatatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatctatggcaccgtagacttcatctttggcaatgc |
115 |
Q |
| |
|
||||||| ||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10820853 |
caatatcgggttaccaagacaccctcatggctcatgcacaacgtcaattttacagacaatgcttcatctatggcaccgtagacttcatctttggcaacgc |
10820952 |
T |
|
| Q |
116 |
cgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaac |
215 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
10820953 |
tgcagtggtattccaaaattgcaacattttcgcaagaaaacctttagatggccaagctaacatgatcactgcccaaggtcgaggtgatccattccaaaac |
10821052 |
T |
|
| Q |
216 |
actggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || ||||||||||||| |
|
|
| T |
10821053 |
actggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttaggaagaccttggcaacaat |
10821152 |
T |
|
| Q |
316 |
attcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtctccatggggtgacactgattttgctcaagacacattgta |
415 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10821153 |
attcaagagttatggtgatgaaaacttttatggacactttagtcagccccctaggttggtctccatggggtgacactgattttgctcaagacacattgta |
10821252 |
T |
|
| Q |
416 |
ttatggagagtatgagaattat |
437 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10821253 |
ttatggagagtatgagaattat |
10821274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 1623667 - 1623255
Alignment:
| Q |
18 |
atatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatctatggcaccgtagacttcatctttggcaatgccg |
117 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
1623667 |
atatcgggctatcaagacactctgatggctcatgcacaacgtcaattctaccgacaatgcttcatctatggcaccgtagacttcatctttggcaacgctg |
1623568 |
T |
|
| Q |
118 |
cagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacac |
217 |
Q |
| |
|
|||| || |||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1623567 |
cagtagtattccaaaactgtaacattttcgcaagaaagcctttggatggccaagctaacatgatcacagcccaaggtcgtggtgacccattccaaaacac |
1623468 |
T |
|
| Q |
218 |
tggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1623467 |
tggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaaggccttggcaacaattc |
1623368 |
T |
|
| Q |
318 |
tcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtctccatggggtgacactgattttgctcaagacacattgtatt |
417 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
1623367 |
tcaagagttatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacacagattttgctcaagatacattgtatt |
1623268 |
T |
|
| Q |
418 |
atggagagtatga |
430 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1623267 |
atggagagtatga |
1623255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 2576071 - 2576132
Alignment:
| Q |
81 |
atctatggcaccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacat |
142 |
Q |
| |
|
|||||||||||||| |||||||| || ||||| || || || |||||||||||||||||||| |
|
|
| T |
2576071 |
atctatggcaccgtcgacttcattttcggcaacgcagctgtagttttccaaaattgtaacat |
2576132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 30 - 437
Target Start/End: Complemental strand, 18781349 - 18780942
Alignment:
| Q |
30 |
caagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatctatggcaccgtagacttcatctttggcaatgccgcagtggttttcc |
129 |
Q |
| |
|
|||||||| || ||||| ||||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||| || |||| |
|
|
| T |
18781349 |
caagacacccttatggcccatgcgcaacgtcaattttacagacaatgcttcatctatggcaccgtcgactttatctttggcaacgccgcagtagtgttcc |
18781250 |
T |
|
| Q |
130 |
aaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcatt |
229 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18781249 |
aaaattgtaacattttcgcaagaaagcctttagatggccaagcaaacatgatcacggcccaaggtcgaggtgacccattccaaaacactggaatttcatt |
18781150 |
T |
|
| Q |
230 |
ccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatg |
329 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
18781149 |
ccacaattgtcaaattatggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggcaggccttggcaacaatattcaagagttatg |
18781050 |
T |
|
| Q |
330 |
gtgatgaaaactttcatggacactttagtgagcccccttggttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatg |
429 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18781049 |
gtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacactgattttgctcaagacacattgtattatggcgagtatg |
18780950 |
T |
|
| Q |
430 |
agaattat |
437 |
Q |
| |
|
|||||||| |
|
|
| T |
18780949 |
agaattat |
18780942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 30 - 404
Target Start/End: Complemental strand, 12802915 - 12802541
Alignment:
| Q |
30 |
caagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatctatggcaccgtagacttcatctttggcaatgccgcagtggttttcc |
129 |
Q |
| |
|
|||||||| || |||| ||| ||||||||||||||||| || |||| | ||||||||||||||| ||||||||||||||||| || || || ||||||| |
|
|
| T |
12802915 |
caagacaccctcatggttcacgcacaacgtcaattttacagagaatgttacatctatggcaccgttgacttcatctttggcaacgcagccgtagttttcc |
12802816 |
T |
|
| Q |
130 |
aaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcatt |
229 |
Q |
| |
|
|||| || | ||| | | |||| |||||| | || ||||| ||||||||||| ||||||||||| | ||||||||| ||||||||||||||||| | |
|
|
| T |
12802815 |
aaaactgcatgattcttgttagaaggcctttaaacggccaagcaaacatgatcacggcccaaggtcgtgatgacccatttcaaaacactggaatttcgat |
12802716 |
T |
|
| Q |
230 |
ccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatg |
329 |
Q |
| |
|
||||| | ||| |||||||| || | ||| | ||||| ||||| | || | ||| ||||||||||| |||| |||||| ||| || |||||| || |
|
|
| T |
12802715 |
tcacaactctcagattagggccgcgccagatttcaagcccgttgtcgggaaattcaacaccttcttgggccggccctggcaaagatactctagagttgtg |
12802616 |
T |
|
| Q |
330 |
gtgatgaaaactttcatggacactttagtgagcccccttggttggtctccatggggtgacactgattttgctcaa |
404 |
Q |
| |
|
|| |||||| | |||||||| | ||| || || || | ||||||||||||||||| | ||| ||||||||||| |
|
|
| T |
12802615 |
gtcatgaaatcattcatggataatttggtcagtccaatgggttggtctccatggggaggtactaattttgctcaa |
12802541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 8767056 - 8767130
Alignment:
| Q |
80 |
catctatggcaccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaa |
154 |
Q |
| |
|
|||||||||||| || || ||||||||||| || ||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
8767056 |
catctatggcacagttgatttcatctttggtaacgccgcggtagttttgcaaaattgtaacattttcgcaagaaa |
8767130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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