View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4588_low_5 (Length: 439)
Name: NF4588_low_5
Description: NF4588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4588_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 136 - 338
Target Start/End: Original strand, 8823177 - 8823379
Alignment:
| Q |
136 |
aagattaactagcttgcaagttacaaaccatatacaacaatggctgctgtttcagcaaacttgttacctcgttgtttggcgtttcttcttcttcttgttt |
235 |
Q |
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| T |
8823177 |
aagattaactagcttgcaagttacaaaccatatacaacaatggctgctgtttcagcaaacttgttacctcgttgtttggcgttttttcttcttcttgttt |
8823276 |
T |
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| Q |
236 |
ttgtcttgtgtagctcaggagcaaaggttgtcactattgatgtacacgcagccaagaatctcatccagaccggtcacatttatcttgatgttaggtaaac |
335 |
Q |
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| T |
8823277 |
ttgtcttgtgtagctcaggagcaaaggttgtcaccattgatgtacacgcagccaagaatctcatccagaccggtcacatttatcttgatgttaggtaaac |
8823376 |
T |
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| Q |
336 |
cta |
338 |
Q |
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||| |
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| T |
8823377 |
cta |
8823379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 8823042 - 8823144
Alignment:
| Q |
1 |
agatttcaaaccaaaccaacatgctgcttacatataaataaacttacatttattgtgtttttcatatacttcaactgaacttaaatgctttagtaaaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8823042 |
agatttcaaaccaaaccaacatgctgcttacatataaataaacttacatttattgtgtttttcatatacttcaactgaacttaaatgctttagtaaaaat |
8823141 |
T |
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| Q |
101 |
cac |
103 |
Q |
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||| |
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| T |
8823142 |
cac |
8823144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 418
Target Start/End: Original strand, 8823425 - 8823459
Alignment:
| Q |
384 |
ataaacaaacaaaagaatcaacaaatcgagaaaat |
418 |
Q |
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| T |
8823425 |
ataaacaaacaaaagaatcaacaaatcgagaaaat |
8823459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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