View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4588_low_6 (Length: 422)
Name: NF4588_low_6
Description: NF4588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4588_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Original strand, 42270155 - 42270557
Alignment:
| Q |
19 |
tggttattataaagtaaaactagcagccctaaacaccgtagtagcaaacttaagccaaacccatgctggcccatcaacttatataataattacccacgaa |
118 |
Q |
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| T |
42270155 |
tggttattataaagtaaaactagcagccctaaacaccgtagtagcaaacttaagccaaacccatgctggcccatcaacttatataataattacccacgaa |
42270254 |
T |
|
| Q |
119 |
cgttagtggaaaaactcggttgcatattttattgtctcccctataattgttataacctacaaatacttatacgtcacttaaatttgagcaatctcatcca |
218 |
Q |
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| T |
42270255 |
cgttagtggaaaaactcggttgcatattttattgtctcccctataattgttataacctacaaatacttatacgtcacttaaatttgagcaatctcatcca |
42270354 |
T |
|
| Q |
219 |
taaattcccaccccacaaggccacaacaacgattaaagaaacaaattaagagagattatacatacatatacactcctacctaggtccattccatcaatta |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
42270355 |
taaattcccaccccacaaggccacaacaacgattaaagaaacaaattaagagagattatacatacatatacactcctacttaggtccattccaccaatta |
42270454 |
T |
|
| Q |
319 |
aaggaatcacaaacaagaagagaaaaataaaatagctagagagaaatacataaagatgagtgaagaatgtggtggaaacactattgctacctatgctact |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
42270455 |
aaggaatcacaaacaagaagagaaaaataaaatagctagagagaaatacataaagatgagtgaagaatgtggtggaaacactattgctacctctactact |
42270554 |
T |
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| Q |
419 |
cca |
421 |
Q |
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||| |
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| T |
42270555 |
cca |
42270557 |
T |
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