View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4588_low_8 (Length: 395)
Name: NF4588_low_8
Description: NF4588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4588_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 7 - 395
Target Start/End: Original strand, 24300268 - 24300663
Alignment:
| Q |
7 |
gattatactgtattttaaaaagaagtattggactgatgggagcagtttcatctagctcaattgtttattgtcagcttgctggatttggagtttagatctc |
106 |
Q |
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| T |
24300268 |
gattatactgtattttaaaaagaagtattggactgatgggagcagtttcatctagctctattgtttattgtcagcttgctgtatttagagtttagatctc |
24300367 |
T |
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| Q |
107 |
ttggtttatgttgcaagttttcgtagctactctcattgaatgtaggagtaatttcatgggacctttagaagtgcgattgttgattgggcggggtggtgct |
206 |
Q |
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| T |
24300368 |
ttggtttatgttgcaagttttcgtagctactctcattgaatgtaggagtaatttcatgggaccttcagaagtgcgattggtgattgggcggggtggtgct |
24300467 |
T |
|
| Q |
207 |
tggtttgatcttgttattttaagggggagtgtgctattttgctacatgtttggcaaatagcattgtatttg--------acttgtgtattagtttttaat |
298 |
Q |
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| T |
24300468 |
tggtttgatcttgttattttaagggggagtgtgctattttgctacatgtttggcaaatagcattgtatttgacttgtgtacttgtgtattagtttttgat |
24300567 |
T |
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| Q |
299 |
ctattctttgctctccttgtgcttggggtatcctatcaatctattttgcttcttnnnnnnnnnntactattaggaaagtagttctttattgtatatt |
395 |
Q |
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| T |
24300568 |
ctattctttgctctccttgtgcttggggtatcctatcaatctattttgcttctt-aaaaaaaaatactaataggaaagtagttctttattgtatatt |
24300663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 3654131 - 3654022
Alignment:
| Q |
200 |
tggtgcttggtttgatcttgttattttaagggggagtgtgctattttgctacatgtttggcaaatagcattgtatttgacttgtgtattagtttttaatc |
299 |
Q |
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| T |
3654131 |
tggtgcttggactgatcttgttattttaagcaggagtctgctattttgttacatgtttgggagaaaacattgtatgtgacttgtgtattagtttttgatc |
3654032 |
T |
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| Q |
300 |
tattctttgc |
309 |
Q |
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|||| ||||| |
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| T |
3654031 |
tattttttgc |
3654022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 3675059 - 3675191
Alignment:
| Q |
200 |
tggtgcttggtttgatcttgttattttaagggggag---tgtgctattttgcta----catgtttggcaaatagcattgtatttgacttgtgtattagtt |
292 |
Q |
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| T |
3675059 |
tggtgcttggactgatcttgttatttttaggaagagtcttttgctattttgctacatgcatgtttggcaaatagcattgtatgtgatttgtttattagtt |
3675158 |
T |
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| Q |
293 |
tttaatctattctttgctctccttgtgcttggg |
325 |
Q |
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| T |
3675159 |
tttgatctatttttttcacttcttgtgcttggg |
3675191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 3701289 - 3701350
Alignment:
| Q |
200 |
tggtgcttggtttgatcttgttattttaagggggagtgtgctattttgctacatgtttggca |
261 |
Q |
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|||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||| |
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| T |
3701289 |
tggtgcttggactgatcttgttattttaaggaggagtatgctactttgctacatgtttggca |
3701350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 21255214 - 21255277
Alignment:
| Q |
291 |
tttttaatctattctttgctctccttgtgcttggggt--atcctatcaatctattttgcttctt |
352 |
Q |
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||||| ||||||||| ||| |||||||||||||||| || |||||||| ||||||||||||| |
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| T |
21255214 |
ttttttatctattctatgcattccttgtgcttggggtagattctatcaatatattttgcttctt |
21255277 |
T |
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