View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4588_low_9 (Length: 354)
Name: NF4588_low_9
Description: NF4588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4588_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 1606452 - 1606126
Alignment:
| Q |
19 |
aatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattcc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606452 |
aatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattcc |
1606353 |
T |
|
| Q |
119 |
aaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1606352 |
aaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggcaggccttggca |
1606253 |
T |
|
| Q |
219 |
acaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtctccatggggtgacactgattttgctcaagacaca |
318 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606252 |
acaatattcaagagttatggtgatgaaaactttcatggacactttagtaagccccctgggttggtctccatggggtgacactgattttgctcaagacaca |
1606153 |
T |
|
| Q |
319 |
ttgtattatggagagtatgagaattat |
345 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
1606152 |
ttgtattatggagagtatgagaattat |
1606126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 22 - 345
Target Start/End: Complemental strand, 1629747 - 1629424
Alignment:
| Q |
22 |
gccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaa |
121 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
1629747 |
gccgcagtggtattccaaaattgtaacattttcgcaagaaagcctttagatggccaagcaaacatgatcactgcccaaggtcgaggtgacccattccaaa |
1629648 |
T |
|
| Q |
122 |
acactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaaca |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
1629647 |
acactggaatttcattccacaattgtcaaattagggctgcatcagatctaaaacctgttgttgacaagtacaaaaccttcttgggcagaccttggcaaca |
1629548 |
T |
|
| Q |
222 |
atattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtctccatggggtgacactgattttgctcaagacacattg |
321 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1629547 |
atattcaagagtaatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacactgattttgctcaagacacattg |
1629448 |
T |
|
| Q |
322 |
tattatggagagtatgagaattat |
345 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1629447 |
tattatggagagtatgagaattat |
1629424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 25 - 345
Target Start/End: Original strand, 10820954 - 10821274
Alignment:
| Q |
25 |
gcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaaca |
124 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
10820954 |
gcagtggtattccaaaattgcaacattttcgcaagaaaacctttagatggccaagctaacatgatcactgcccaaggtcgaggtgatccattccaaaaca |
10821053 |
T |
|
| Q |
125 |
ctggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaata |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||||| |
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|
| T |
10821054 |
ctggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttaggaagaccttggcaacaata |
10821153 |
T |
|
| Q |
225 |
ttcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtctccatggggtgacactgattttgctcaagacacattgtat |
324 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10821154 |
ttcaagagttatggtgatgaaaacttttatggacactttagtcagccccctaggttggtctccatggggtgacactgattttgctcaagacacattgtat |
10821253 |
T |
|
| Q |
325 |
tatggagagtatgagaattat |
345 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10821254 |
tatggagagtatgagaattat |
10821274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 25 - 338
Target Start/End: Complemental strand, 1623568 - 1623255
Alignment:
| Q |
25 |
gcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaaca |
124 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
1623568 |
gcagtagtattccaaaactgtaacattttcgcaagaaagcctttggatggccaagctaacatgatcacagcccaaggtcgtggtgacccattccaaaaca |
1623469 |
T |
|
| Q |
125 |
ctggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaata |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
1623468 |
ctggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaaggccttggcaacaatt |
1623369 |
T |
|
| Q |
225 |
ttcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtctccatggggtgacactgattttgctcaagacacattgtat |
324 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
1623368 |
ctcaagagttatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacacagattttgctcaagatacattgtat |
1623269 |
T |
|
| Q |
325 |
tatggagagtatga |
338 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1623268 |
tatggagagtatga |
1623255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 22 - 345
Target Start/End: Complemental strand, 18781265 - 18780942
Alignment:
| Q |
22 |
gccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaa |
121 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18781265 |
gccgcagtagtgttccaaaattgtaacattttcgcaagaaagcctttagatggccaagcaaacatgatcacggcccaaggtcgaggtgacccattccaaa |
18781166 |
T |
|
| Q |
122 |
acactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaaca |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18781165 |
acactggaatttcattccacaattgtcaaattatggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggcaggccttggcaaca |
18781066 |
T |
|
| Q |
222 |
atattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtctccatggggtgacactgattttgctcaagacacattg |
321 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18781065 |
atattcaagagttatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacactgattttgctcaagacacattg |
18780966 |
T |
|
| Q |
322 |
tattatggagagtatgagaattat |
345 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
18780965 |
tattatggcgagtatgagaattat |
18780942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 76 - 312
Target Start/End: Complemental strand, 12802777 - 12802541
Alignment:
| Q |
76 |
caagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagc |
175 |
Q |
| |
|
||||| ||||||||||| ||||||||||| | ||||||||| ||||||||||||||||| | ||||| | ||| |||||||| || | ||| | |||| |
|
|
| T |
12802777 |
caagcaaacatgatcacggcccaaggtcgtgatgacccatttcaaaacactggaatttcgattcacaactctcagattagggccgcgccagatttcaagc |
12802678 |
T |
|
| Q |
176 |
ctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagccccct |
275 |
Q |
| |
|
| ||||| | || | ||| ||||||||||| |||| |||||| ||| || |||||| |||| |||||| | |||||||| | ||| || || || | |
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|
| T |
12802677 |
ccgttgtcgggaaattcaacaccttcttgggccggccctggcaaagatactctagagttgtggtcatgaaatcattcatggataatttggtcagtccaat |
12802578 |
T |
|
| Q |
276 |
tggttggtctccatggggtgacactgattttgctcaa |
312 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||| |
|
|
| T |
12802577 |
gggttggtctccatggggaggtactaattttgctcaa |
12802541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 8767090 - 8767130
Alignment:
| Q |
22 |
gccgcagtggttttccaaaattgtaacattttcgcaagaaa |
62 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
8767090 |
gccgcggtagttttgcaaaattgtaacattttcgcaagaaa |
8767130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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