View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4589-Insertion-1 (Length: 771)
Name: NF4589-Insertion-1
Description: NF4589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4589-Insertion-1 |
 | |
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| [»] chr7 (9 HSPs) |
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| [»] scaffold2079 (2 HSPs) |
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| [»] scaffold1112 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 589; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 8 - 771
Target Start/End: Complemental strand, 6347153 - 6346389
Alignment:
| Q |
8 |
aaaacgaattcgtattaaacgttttatgggtcactatcacatgagttaacccaaattatgtcaaagctctttttctatgctttttcttcaacaaagacag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6347153 |
aaaacgaattcgtattaaacgttttatgggtcactatcacatgagttaacccaaattatgtcaaagctctttttctatgctttttcttcaacaaagacag |
6347054 |
T |
|
| Q |
108 |
tccactgcaatacaaaccttaagtcttgtataaataggtttaaagtgtcacattgtaaccaactttaatttctcattttgtaatatactttctcattact |
207 |
Q |
| |
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|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6347053 |
tccaatgtaatacaaaccttaagtcttgtataaataggtttaagctgtcacattgtaaccaactttaatttctcattttgtaatatactttctcattact |
6346954 |
T |
|
| Q |
208 |
atcaatacaagcttttctctattccttccatggatgccatgcttcataacaatactgaagttagtgttgagctcacagtaagaggaacaatggcacaagg |
307 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
6346953 |
atcaatacaagcttttctcttttccttccatggatgccatgcttcataacaatactgaaatttgtgttgagctcacagtaagaggaacaatggcacaagg |
6346854 |
T |
|
| Q |
308 |
aactacagcagtaaatgcgaccgtgttcaattcaacttcaacaaggttaataagttcaattctcagctcataattcactactaaaacattaacttgctat |
407 |
Q |
| |
|
||| ||| || | |||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6346853 |
aaccacaacatcatatgcaaccgtgttcaattcaacttcaacaaggtaaattagttcaattctcagctcataattcactactaaaacattaacttgctat |
6346754 |
T |
|
| Q |
408 |
gtttctccttttta-ttggtaactcttctactttgaagttattaaatatactattgctaacattttcttttcttgaatttattcaaccctttctagcttg |
506 |
Q |
| |
|
||||||| |||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
6346753 |
gtttctcttttttatttggtaactcttctacattcaagttattaaatatactattgctaacattttattttcttgaatttattcaaccctttctagcttg |
6346654 |
T |
|
| Q |
507 |
aatgaagttggaaaactatttggccaattttttgagctattgtttgcaataatcgggtttgcaacaacaaatgcaagtatggagaaatcaccacttctgt |
606 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||| || ||||||||||||||| |
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|
| T |
6346653 |
aatgaagttggaaaactattaagccaattttttgagctattgttcgcaataattgggtttgcaacaacgaatacaagtatcgaaaaatcaccacttctga |
6346554 |
T |
|
| Q |
607 |
ttgctttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttat |
706 |
Q |
| |
|
| ||||| ||||||||||||||||||| || | |||||||||||||| | |||| | | ||| |||||||||||| |||||||||||||||||||||||| |
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|
| T |
6346553 |
tggctttggttttcatggttgctctttactacttggttttggtgcttgtgacaatgctacagcttcacatcaagaacttccttccattcatgatggttat |
6346454 |
T |
|
| Q |
707 |
tgttttacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttgga |
771 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
6346453 |
tgttttacttggaagtgttgtttcagttctagctttgatgatgatttctcctacaattgcttgga |
6346389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 612 - 771
Target Start/End: Original strand, 6219562 - 6219721
Alignment:
| Q |
612 |
ttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattgttt |
711 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6219562 |
ttagttttcatggttgctcttttcttcatggttttggtgcttattacaatgttacagattcacatcaagagcttccttccattcatgatggttattgttt |
6219661 |
T |
|
| Q |
712 |
tacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttgga |
771 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
6219662 |
tacttggaagtgttgtttcagttctagctttgatgatgatttctcctacaattgcttgga |
6219721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 6330675 - 6330494
Alignment:
| Q |
8 |
aaaacgaattcgtattaaacgttttatgggtcactatcacatgagttaacccaaattatg----tcaaagctctttttctatgctttttcttcaacaaag |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||| ||||||||||||||||| |
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| T |
6330675 |
aaaacgaattcgtattaaacgttttatgggtcactatcaca---gttaacccaaattattattattaaagctctttttctattctttttcttcaacaaag |
6330579 |
T |
|
| Q |
104 |
acagtccact--gcaatacaaaccttaagtcttgtataaataggtttaaagtgtcacattgtaaccaactttaatttctcatttt |
186 |
Q |
| |
|
|||| ||| | ||||||||||||||||||| | || |||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
6330578 |
acagaccaatatgcaatacaaaccttaagtcatataaaaataggtttaaggtgtcacattgtaaccaactttaatttctcatttt |
6330494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 474 - 731
Target Start/End: Original strand, 6242588 - 6242845
Alignment:
| Q |
474 |
ttttcttgaatttattcaaccctttctagcttgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaataatcgggtttgcaacaa |
573 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||||||||| ||||||||||| ||| |
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|
| T |
6242588 |
ttttcttgaattcattcaaccctttctagattgaatgaagttggagaattatttggccaatttttcaagctattgtttgcaatcgtcgggtttgcagcaa |
6242687 |
T |
|
| Q |
574 |
caaatgcaagtatggagaaatcaccacttctgtttgctttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattca |
673 |
Q |
| |
|
||| |||| | | ||||| | ||| || | ||||| |||||| || ||||| || | | | |||||||||| | |||| ||| ||| |||| |
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|
| T |
6242688 |
tgaatacaagcaacggaaaatctctactgatgatggctttggttttcgctatttttctttactacctagctttggtgcttgtgacaatgttacagcttca |
6242787 |
T |
|
| Q |
674 |
catcaagagcttccttccattcatgatggttattgttttacttggaagtgttgtttca |
731 |
Q |
| |
|
|||||| || |||||||||| ||||||||| ||| ||||||||||||||||| ||||| |
|
|
| T |
6242788 |
catcaatagtttccttccatacatgatggtaattcttttacttggaagtgttatttca |
6242845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 609 - 771
Target Start/End: Complemental strand, 6333434 - 6333272
Alignment:
| Q |
609 |
gctttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattg |
708 |
Q |
| |
|
|||||||||||||||||| |||||| || | ||| |||||||||| | ||| ||| || ||||||||||||| ||| |||| | || |||| | ||| |
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|
| T |
6333434 |
gctttagttttcatggtttctctttactacctggctttggtgcttgtgacattgttgcattttcacatcaagagtttctttccttccaagatgatcattc |
6333335 |
T |
|
| Q |
709 |
ttttacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttgga |
771 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||| ||||||| |||||||||||||| |
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|
| T |
6333334 |
ttttacttggaagtgttgtttcagttttagctttgatgataatttctcctacaattgcttgga |
6333272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 474 - 568
Target Start/End: Complemental strand, 6326107 - 6326013
Alignment:
| Q |
474 |
ttttcttgaatttattcaaccctttctagcttgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaataatcgggtttgc |
568 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
6326107 |
ttttcttgaattcattcaaccatttctagattgaaagaagtgggaaaattatttggccaatttttcgagctattgtttgcaatcatcgggtttgc |
6326013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 458 - 568
Target Start/End: Complemental strand, 6333599 - 6333490
Alignment:
| Q |
458 |
tattgctaacattttcttttcttgaatttattcaaccctttctagcttgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaata |
557 |
Q |
| |
|
|||| ||||||||| |||| |||||||| |||||||| ||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
6333599 |
tattcctaacatttacttt-cttgaattcattcaaccatttctagattgaaagaagtgggaaaattatttggccaatttttcgagctattgtttgcaatc |
6333501 |
T |
|
| Q |
558 |
atcgggtttgc |
568 |
Q |
| |
|
||||||||||| |
|
|
| T |
6333500 |
atcgggtttgc |
6333490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 609 - 731
Target Start/End: Complemental strand, 6325957 - 6325835
Alignment:
| Q |
609 |
gctttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattg |
708 |
Q |
| |
|
|||||||||||||||||| |||||| || | ||| |||||||||| | |||| | | || |||||||||||||| ||| |||| | || |||| | ||| |
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|
| T |
6325957 |
gctttagttttcatggtttctctttactacctggctttggtgcttgtaacaatgatacatattcacatcaagagattcattccttccaagatgatcattc |
6325858 |
T |
|
| Q |
709 |
ttttacttggaagtgttgtttca |
731 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
6325857 |
ttttacttggaagtgttgtttca |
6325835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 6219395 - 6219457
Alignment:
| Q |
451 |
aatatactattgctaacattttcttttcttgaatttattcaaccctttctagcttgaatgaag |
513 |
Q |
| |
|
||||||||||| ||||||||| | || ||||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
6219395 |
aatatactattcctaacatttgatatttttgaattgattcaactctttctagcttgactgaag |
6219457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 483 - 569
Target Start/End: Original strand, 823 - 909
Alignment:
| Q |
483 |
atttattcaaccctttctagcttgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaataatcgggtttgca |
569 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| || |||||||||||||||| ||| |||||||||||| ||||||||||| |
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|
| T |
823 |
atttattcaaccctttctagattgaatgaagttggagaattatttggccaatttttcaagcaattgtttgcaatcgtcgggtttgca |
909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 670 - 771
Target Start/End: Original strand, 992 - 1093
Alignment:
| Q |
670 |
ttcacatcaagagcttccttccattcatgatggttattgttttacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttg |
769 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||| ||| ||||||||||||||||||||||| || | || |||||| | ||||| | ||||||||||| |
|
|
| T |
992 |
ttcacatcaatagtttcctcccattcatgatggtaattcttttacttggaagtgttgtttcaattttagcattgatggttatttcgccgacaattgcttg |
1091 |
T |
|
| Q |
770 |
ga |
771 |
Q |
| |
|
|| |
|
|
| T |
1092 |
ga |
1093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 127 - 223
Alignment:
| Q |
8 |
aaaacgaattcgtattaaacgttttatgggtcactatca--catgagttaacccaaattatgtcaaagctctttttctatgctttttcttcaacaaag |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||| ||||| |||||| |||||| |||||||||||||||| |
|
|
| T |
127 |
aaaacgaattcgtattaaacgttttatgggtcactttcagtca-ccgtttacccaaattatatcaaatctctttatctatgttttttcttcaacaaag |
223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 228 - 261
Target Start/End: Original strand, 5690866 - 5690899
Alignment:
| Q |
228 |
attccttccatggatgccatgcttcataacaata |
261 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
5690866 |
attccttccatggatgccatgtttcataacaata |
5690899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 2427244 - 2427281
Alignment:
| Q |
136 |
tataaataggtttaaagtgtcacattgtaaccaacttt |
173 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
2427244 |
tataaataggcttaaggtgtcacattgtaaccaacttt |
2427281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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