View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4589-Insertion-2 (Length: 765)
Name: NF4589-Insertion-2
Description: NF4589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4589-Insertion-2 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 455
Target Start/End: Original strand, 29005657 - 29006103
Alignment:
| Q |
8 |
attgggaccaaaattgaaggccacgttatatgtgaagagagtgggaccattaattttagtgactaagaagatgcagtgaaacttgtgtgtggaagttata |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29005657 |
attgggaccaaaattgaaggccacgttatatgtgaagagggtgggaccattaattttagtgactaagaagatgcagtgaaacttgtgtgtggaagttata |
29005756 |
T |
|
| Q |
108 |
gtataccaaggaagttgctttgatagtactaaatgtgtgtgaaattgaacacatggttgttgtatagttgacctctaattattaatttcgtgtttcaggc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29005757 |
gtataccaaggaagttgctttgatagtactaaatgtgtgtgaaattgaacacatggttgttgtatagttgacctctaattattaatttcgtgtttcaggc |
29005856 |
T |
|
| Q |
208 |
caccatgtacatgttgtggtataacacaactatgatattttcgatttgatgcaaacataaattcgcaaaataataacaatagtaatacta-nnnnnnnna |
306 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29005857 |
caccatgtacatgttgtggtata--acaactatgatattttcgatttgatttaaacataaattcgcaaaataataacaatagtaatactattttttttaa |
29005954 |
T |
|
| Q |
307 |
aagaaataacaataataatatatatgcaagcaataatatttttgatttgatatcaacataatttatgccaaaagtctctctctatattcctttaaaacga |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29005955 |
aagaaataacaataataatatatatgcaagcaataatatttttgatttgatatcaacataatttatgccaaaagtctctctctatattcctttaaaacga |
29006054 |
T |
|
| Q |
407 |
gggatcatcgttttgggcttgacttagatgatagaaacattatataata |
455 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
29006055 |
gggatcattgttttgggcttgactcagttgatagaaacattatataata |
29006103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 483 - 682
Target Start/End: Original strand, 29006103 - 29006304
Alignment:
| Q |
483 |
acatccacttattcacttataaaagataaatttctaacgactaaattacttnnnnnnnc--cgagagatcactacacacgacatatgatggcccctacct |
580 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||| || || |||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
29006103 |
acatccacttaatcacttataaaagataaatttctaacaactaaactatttgaaaaaaaaacgagagatcactacacacgacataagatgggccctacct |
29006202 |
T |
|
| Q |
581 |
tcctcatctctgcagaaatcatgcgcacattctcaatagagattggaatttggggccccctccccattcctggtagttaattgcctaaattgggttcctc |
680 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29006203 |
tcctcatctctgcagaaatcatgcgcccattctcaatatagattggaatttgggcccccctccccattcctggtagttaattgcctaaattggtttcctc |
29006302 |
T |
|
| Q |
681 |
at |
682 |
Q |
| |
|
|| |
|
|
| T |
29006303 |
at |
29006304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 730 - 765
Target Start/End: Complemental strand, 13241906 - 13241871
Alignment:
| Q |
730 |
gtattcaccttatcaatatctcaaatccattatgga |
765 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
13241906 |
gtattcaccttatcaatatctcaaatccattatgga |
13241871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 730 - 765
Target Start/End: Original strand, 29007145 - 29007180
Alignment:
| Q |
730 |
gtattcaccttatcaatatctcaaatccattatgga |
765 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
29007145 |
gtattcaccttatcaatatctcaaatccattatgga |
29007180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 730 - 765
Target Start/End: Complemental strand, 54835316 - 54835281
Alignment:
| Q |
730 |
gtattcaccttatcaatatctcaaatccattatgga |
765 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
54835316 |
gtattcaccttatcaatatctcaaatccattatgga |
54835281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 729 - 763
Target Start/End: Original strand, 41072908 - 41072942
Alignment:
| Q |
729 |
ggtattcaccttatcaatatctcaaatccattatg |
763 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41072908 |
ggtattcaccttatcaatatcccaaatccattatg |
41072942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 730 - 765
Target Start/End: Complemental strand, 6951066 - 6951031
Alignment:
| Q |
730 |
gtattcaccttatcaatatctcaaatccattatgga |
765 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
6951066 |
gtattcaccttatcaatatctcaaatccattatgga |
6951031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 730 - 765
Target Start/End: Original strand, 12333669 - 12333704
Alignment:
| Q |
730 |
gtattcaccttatcaatatctcaaatccattatgga |
765 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
12333669 |
gtattcaccttatcaatatctcaaatccattatgga |
12333704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 730 - 765
Target Start/End: Original strand, 18187023 - 18187058
Alignment:
| Q |
730 |
gtattcaccttatcaatatctcaaatccattatgga |
765 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
18187023 |
gtattcaccttatcaatatctcaaatccattatgga |
18187058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 730 - 763
Target Start/End: Complemental strand, 39507233 - 39507200
Alignment:
| Q |
730 |
gtattcaccttatcaatatctcaaatccattatg |
763 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
39507233 |
gtattcaccttatcaatatctcaaatccattatg |
39507200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University