View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4589-Insertion-3 (Length: 739)
Name: NF4589-Insertion-3
Description: NF4589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4589-Insertion-3 |
 | |
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| [»] chr7 (3 HSPs) |
| |
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| [»] chr8 (3 HSPs) |
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|
| [»] chr1 (2 HSPs) |
| |
|
| [»] scaffold1322 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 8 - 739
Target Start/End: Original strand, 5112908 - 5113634
Alignment:
| Q |
8 |
actattgcctatttcattaacccnnnnnnngatgcaatcataggacctgcaaagcctcttacaagttcaacttcaccagccatatatccatccatgccat |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5112908 |
actattgcctatttcattaacccaaaaaaagatgcaatcataggacctgcaaagcctcttgcaagttcaacttcacaagccatatatccatccatgccat |
5113007 |
T |
|
| Q |
108 |
ttggagaattgttggagaattttatgaacaagggtccttactttgaagctgaatttcgcttataaaaatttaatctttgtgcctgaggaaatatacaagt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5113008 |
ttggagaattgttggagaattttatgaacaagggtccttactttgaagctgaattccgcttataaaaatttaatttttgtgcctgaggaaatatacaagt |
5113107 |
T |
|
| Q |
208 |
aatcatgaataagttgt--------tatccaagcaaatgaataatttatcttgtagtttttgactttatgaaggtcttatttatgaccaaacagttatgt |
299 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5113108 |
aatcatgaataagttgttggactggtatccaagcaaatgaataatttatcttgtagtttttgactttatgaaggtcttatttatgaccaaacagttatgt |
5113207 |
T |
|
| Q |
300 |
gcaaccttc--ctcttggccttgagttgaattaatttgtctttcactt-gagtaattttatatcatatactgttggaaaaattaaataagtgatagacat |
396 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5113208 |
gcaaccttcctctcttggtcttgagttgaattaatttgtctttcacttagagtaattttatatcatatactgttggaaaaattaaataagtgatagacat |
5113307 |
T |
|
| Q |
397 |
ttggtgatggcggatttattaa-nnnnnnnnatctaatttcattcactatttttactcaaatatattttgagaggatatggatatattttgtggatatgg |
495 |
Q |
| |
|
||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5113308 |
ttggtgatggccgatttattaatttttttttatctaaattcattcactatttttactcaaatatattttgagaggatatggatatattttgtggatatgg |
5113407 |
T |
|
| Q |
496 |
atagatttttacccatttcaaagctttagattctgacttgtctttgttgggtgagtattattagnnnnnnnngttttaatccataatcatgcttaacaaa |
595 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
5113408 |
atagattttcacccatttcaaagctttagattctgacttgtctttcttgggtgagtattattag-tttgtgtgttttaatccataatcatgcttaacaaa |
5113506 |
T |
|
| Q |
596 |
catttaacagtttggtttgttactttggataaacttcattttagttagttacaagagacttactctataagtcattgtatatatacttgtttgtaacaca |
695 |
Q |
| |
|
|| |||| ||||| ||||||| |||||||||||||||||||| ||||||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
5113507 |
cacttaagagtttaatttgttattttggataaacttcattttaattagttacagaagacttactc----------------tatacttgcttgtaacaca |
5113590 |
T |
|
| Q |
696 |
atttttagtgtgaataaaattttcaattcaatattctatctctc |
739 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5113591 |
atctttagtgtgaataaaattttcaattcaatattctatctctc |
5113634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 5106425 - 5106538
Alignment:
| Q |
41 |
gcaatcataggacctgcaaagcctcttacaagttcaacttcaccagccatatatccatccatgccatttggagaattgttggagaattttatgaacaagg |
140 |
Q |
| |
|
||||| ||||||||||| ||||||||| |||||||||||||||| | ||||| |||| ||| |||||||||| || |||||||||| ||||||| |
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|
| T |
5106425 |
gcaattataggacctgccaagcctcttttaagttcaacttcaccaccaatatactcatctatggaatttggagaaatgctggagaatttatacaacaagg |
5106524 |
T |
|
| Q |
141 |
gtccttactttgaa |
154 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
5106525 |
gtcctaactttgaa |
5106538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 643 - 692
Target Start/End: Complemental strand, 3952623 - 3952574
Alignment:
| Q |
643 |
gttacaagagacttactctataagtcattgtatatatacttgtttgtaac |
692 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||| ||||||| |
|
|
| T |
3952623 |
gttacaagagacttgctctctaagtcattgtatatatacttgcttgtaac |
3952574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 2e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 570 - 739
Target Start/End: Original strand, 411424 - 411593
Alignment:
| Q |
570 |
tttaatccataatcatgcttaacaaacatttaacagtttggtttgttactttggataaacttcattttagttagttacaagagacttactctataagtca |
669 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
411424 |
tttaatccataatcatgcttaacaaacacttaagagtttagtttgttactttggataaacttcattttaattagttacaagagacttactctataagtca |
411523 |
T |
|
| Q |
670 |
ttgtatatatacttgtttgtaacacaatttttagtgtgaataaaattttcaattcaatattctatctctc |
739 |
Q |
| |
|
||||||||||||||| |||||| ||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
411524 |
ttgtatatatacttgcttgtaatacaatcattagtgagaataaaattttcaattcaatattctatctctc |
411593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 570 - 739
Target Start/End: Original strand, 18191049 - 18191218
Alignment:
| Q |
570 |
tttaatccataatcatgcttaacaaacatttaacagtttggtttgttactttggataaacttcattttagttagttacaagagacttactctataagtca |
669 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18191049 |
tttaatccataatgatgcttaagaaacacttaagagtttagtttgttattttggataaacttcattttagttagttacaagagacttactctataagtca |
18191148 |
T |
|
| Q |
670 |
ttgtatatatacttgtttgtaacacaatttttagtgtgaataaaattttcaattcaatattctatctctc |
739 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191149 |
ttgtatatatacttgcttgtaacacaatcattagtgtgaataaaattttcaattcaatattctatctctc |
18191218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 570 - 739
Target Start/End: Original strand, 18194725 - 18194894
Alignment:
| Q |
570 |
tttaatccataatcatgcttaacaaacatttaacagtttggtttgttactttggataaacttcattttagttagttacaagagacttactctataagtca |
669 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| | ||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18194725 |
tttaatacataatcatgcttaacaaacacttaagattttagttcgttattttggataaacttcattttagttagttacaagagacttactttataagtca |
18194824 |
T |
|
| Q |
670 |
ttgtatatatacttgtttgtaacacaatttttagtgtgaataaaattttcaattcaatattctatctctc |
739 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18194825 |
ttgtatatatacttgcttgtaacacaatcattactgtgaataaaattttcaattcaatattctttctctc |
18194894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 8e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 578 - 739
Target Start/End: Complemental strand, 4958000 - 4957839
Alignment:
| Q |
578 |
ataatcatgcttaacaaacatttaacagtttggtttgttactttggataaacttcattttagttagttacaagagacttactctataagtcattgtatat |
677 |
Q |
| |
|
||||| |||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4958000 |
ataattatgcttaacaaacacttaagagtttagtttgttgctttggataaacttcattttatttagttacaagatacttactctataagtcattgtatat |
4957901 |
T |
|
| Q |
678 |
atacttgtttgtaacacaatttttagtgtgaataaaattttcaattcaatattctatctctc |
739 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4957900 |
atacttgcttgtaacacaatcattagtgtgaataaaattttcaattcaatattctctctctc |
4957839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 568 - 739
Target Start/End: Complemental strand, 26075336 - 26075174
Alignment:
| Q |
568 |
gttttaatccataatcatgcttaacaaacatttaaca---gtttggtttgttactttggataaacttcattttagttagttacaagagacttactctata |
664 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | |||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26075336 |
gttttaatccataatcatgcttaacaaacacttaagaagagtttagtttgttattttggataaacttcattt-agttagttacaagagacttactctata |
26075238 |
T |
|
| Q |
665 |
agtcattgtatatatacttgtttgtaacacaatttttagtgtgaataaaattttcaattcaatattctatctctc |
739 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26075237 |
agtc-----------tcttgcttgtaacacaatcattagtgtgaataaaattttcaattcaatattctatctctc |
26075174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 570 - 697
Target Start/End: Original strand, 26078879 - 26079012
Alignment:
| Q |
570 |
tttaatccataatcatgcttaacaaacatttaacagtttggtttgttactttggataaacttcattttagttagttacaagagacttactctataagtc- |
668 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26078879 |
tttaatccataatcatgcttaacaaacacttaagagtttagtttgttactttggagaaacttcattttagttagttacaagagacttactctataagtca |
26078978 |
T |
|
| Q |
669 |
-----attgtatatatacttgtttgtaacacaat |
697 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26078979 |
ttaatattgtatatatacttgtttgtaacacaat |
26079012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 3e-44; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 588 - 728
Target Start/End: Complemental strand, 14321250 - 14321108
Alignment:
| Q |
588 |
ttaacaaacatttaacagtttggtttgttactttggataaacttcattttagttagttacaagagacttactctataagtcattgtatatatacttgttt |
687 |
Q |
| |
|
|||||||||| |||| ||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
14321250 |
ttaacaaacacttaagagtttagtttgttagtttggataaacttcactttagttagttacaagagacttactctataagtcattgtatatatatttgctt |
14321151 |
T |
|
| Q |
688 |
gtaacacaat--ttttagtgtgaataaaattttcaattcaata |
728 |
Q |
| |
|
||||| |||| ||| |||||||||||||||||||||||||| |
|
|
| T |
14321150 |
gtaactcaatcatttgtgtgtgaataaaattttcaattcaata |
14321108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 568 - 680
Target Start/End: Original strand, 21461940 - 21462051
Alignment:
| Q |
568 |
gttttaatccataatcatgcttaacaaacatttaacagtttggtttgttacttt-ggataaacttcattttagttagttacaagagacttactctataag |
666 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| ||||| |||||||||||| |||||| ||| ||| |||||||||||||||||||||||| |||| |
|
|
| T |
21461940 |
gttttaatccataatcatgattaacaaacacttaatagtttagtttgttacttttggataagcttgatt--agttagttacaagagacttactctctaag |
21462037 |
T |
|
| Q |
667 |
tcattgtatatata |
680 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21462038 |
tcattgtatatata |
21462051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 636 - 680
Target Start/End: Original strand, 21465232 - 21465276
Alignment:
| Q |
636 |
ttagttagttacaagagacttactctataagtcattgtatatata |
680 |
Q |
| |
|
|||||| |||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
21465232 |
ttagttggttacaggagacttactctctaagtcattgtatatata |
21465276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1322 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: scaffold1322
Description:
Target: scaffold1322; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 591 - 737
Target Start/End: Complemental strand, 486 - 338
Alignment:
| Q |
591 |
acaaacatttaacagtttggtttgttactttggataaacttcattttagttagttacaagagacttactctataagtcattgtatatatacttgtttgta |
690 |
Q |
| |
|
||||||| |||| ||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
486 |
acaaacacttaagagtttagtttgttagtttggataaacttcactttagttagttacaagagacttactctataagtcattgtatatatacttgcttgca |
387 |
T |
|
| Q |
691 |
acacaat--ttttagtgtgaataaaattttcaattcaatattctatctc |
737 |
Q |
| |
|
|| |||| ||| |||||||||||||||||||||||||| ||| |||| |
|
|
| T |
386 |
actcaatcatttgtgtgtgaataaaattttcaattcaatactctctctc |
338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 570 - 631
Target Start/End: Original strand, 12392067 - 12392127
Alignment:
| Q |
570 |
tttaatccataatcatgcttaacaaacatttaacagtttggtttgttactttggataaactt |
631 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||||||||| |
|
|
| T |
12392067 |
tttaatccata-tcatgcttaacaaacacttaagagtttagtttgttactttggataaactt |
12392127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 636 - 692
Target Start/End: Complemental strand, 32366761 - 32366705
Alignment:
| Q |
636 |
ttagttagttacaagagacttactctataagtcattgtatatatacttgtttgtaac |
692 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||||||||||||||||||| ||||||| |
|
|
| T |
32366761 |
ttaggtagttacaagagacttgctctctaagtcattgtatatatacttacttgtaac |
32366705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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