View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4589-Insertion-4 (Length: 652)
Name: NF4589-Insertion-4
Description: NF4589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4589-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 189 - 436
Target Start/End: Complemental strand, 43213488 - 43213241
Alignment:
| Q |
189 |
agtcggcaacaaaaaattgttttgcccggatttatatatccaacaaaaaatacatttgtgtatgtaagtaacttcaaaaaagcaatgttgagtgcatcta |
288 |
Q |
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| T |
43213488 |
agtcggcaacaaaaaattgttttgcccggatttatatatccaacaaaaaatacatttgtgtatgtaagtaacttcaaaaaagcaatgttgagtgcatcta |
43213389 |
T |
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| Q |
289 |
attcaaggtcgatatcaagatagtagcaatctaagccaaaaccaagccccgttttttcgataaataaaccaaggttccacatgtaaaggtagattaatct |
388 |
Q |
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| T |
43213388 |
attcaaggtcgatatcaagatagtagcaatctaagccaaaaccaagccccgttttttcgataaataaaccaaggttccacatgtaaaggtagattaatct |
43213289 |
T |
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| Q |
389 |
ctctaaataacatagattcatatccaccaaaccctccttgaaaaattt |
436 |
Q |
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| T |
43213288 |
ctctaaataacatagattcatatccaccaaatcctccttcaaaaattt |
43213241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 43213715 - 43213552
Alignment:
| Q |
12 |
ttctccctcgtgtgtcttaaaaaacactcaactaaatttgcttattcaacaacaacaacaaatattaacccattaaatatgatcaaccaaatagatcaag |
111 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
43213715 |
ttctcccttgtgtgtcttaaaaaacactcaactaaatttgcttattcaacaacaacaa---atattaacccattaaatatgatcaattaaatagatcaag |
43213619 |
T |
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| Q |
112 |
ttacgtcataataaatatttattgtaaaccgttgtattttactgcattcaagtggcattgcagtagtcctt |
182 |
Q |
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| T |
43213618 |
ttacgtcataata----tttattgtaaaccgttgtattttactgcattcaagtggcattgcagtagtcctt |
43213552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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