View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4589-Insertion-5 (Length: 454)
Name: NF4589-Insertion-5
Description: NF4589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4589-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 38 - 272
Target Start/End: Complemental strand, 10408643 - 10408410
Alignment:
| Q |
38 |
tatatcgtgaagcaaaagtaagaaaatcgagtctatcataatatgcagnnnnnnnnnngttatccattcatatatcataattaagcattaaattgatttt |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
10408643 |
tatatcgtgaagcaaaagtaagaaaatcgagtctatcataatatgcagttttttt---gctatccattcatatatcataattaagcattaaattgatttt |
10408547 |
T |
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| Q |
138 |
gtggtggatagttaataaatttgagataatagtttttt--agagggtggcaagattttaatagagaatgaggagtttctatagatatgccacatagacac |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10408546 |
gtggtggatagttaataaatttgagataatagttttttagagagggtggcaagattttaatagagaatgaggagtttctatagatatgccacatagacac |
10408447 |
T |
|
| Q |
236 |
aatccaagcattagaatgaagaaagtttataattcaa |
272 |
Q |
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||||||||||||| ||||| | |||||| |||||||| |
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| T |
10408446 |
aatccaagcattaaaatgatgcaagtttctaattcaa |
10408410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 333 - 411
Target Start/End: Complemental strand, 10408367 - 10408289
Alignment:
| Q |
333 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgatatacacccgcaccc |
411 |
Q |
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| T |
10408367 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgatatacaccctcaccc |
10408289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 333 - 411
Target Start/End: Complemental strand, 10391625 - 10391547
Alignment:
| Q |
333 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgatatacacccgcaccc |
411 |
Q |
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| T |
10391625 |
acacatgacatgcaactgttatcagcataactgaattcatcaccttgaaagctcttagggttgatatacacccccaccc |
10391547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 10403134 - 10403070
Alignment:
| Q |
333 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgat |
397 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||| |
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| T |
10403134 |
acacaagacatgcaactgttatcagaatgactgaattcatcaccttgaaagctattagggttgat |
10403070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 51168994 - 51169038
Alignment:
| Q |
228 |
atagacacaatccaagcattagaatgaagaaagtttataattcaa |
272 |
Q |
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|||| |||||||||||||||||||||||| |||||| |||||||| |
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| T |
51168994 |
ataggcacaatccaagcattagaatgaagcaagtttctaattcaa |
51169038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 9580138 - 9580085
Alignment:
| Q |
219 |
atatgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
272 |
Q |
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||||| ||||||| |||||||||||||||||||||||| |||||| ||||||| |
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| T |
9580138 |
atatgtcacataggcacaatccaagcattagaatgaagcaagtttcaaattcaa |
9580085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 9585833 - 9585780
Alignment:
| Q |
219 |
atatgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
272 |
Q |
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||||| ||||||| |||||||||||||||||||||||| |||||| ||||||| |
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| T |
9585833 |
atatgtcacataggcacaatccaagcattagaatgaagcaagtttcaaattcaa |
9585780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 272
Target Start/End: Complemental strand, 9366716 - 9366669
Alignment:
| Q |
225 |
cacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
272 |
Q |
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||||||| ||||||||||||||||||||||| |||||| |||||||| |
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| T |
9366716 |
cacataggcacaatccaagcattagaatgaaacaagtttctaattcaa |
9366669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 29902789 - 29902739
Alignment:
| Q |
222 |
tgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
272 |
Q |
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|||||||||| |||||||||| ||||||||||||| |||||| ||||||| |
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| T |
29902789 |
tgccacataggcacaatccaaacattagaatgaagcaagtttcaaattcaa |
29902739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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