View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4589-Insertion-6 (Length: 143)

Name: NF4589-Insertion-6
Description: NF4589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4589-Insertion-6
NF4589-Insertion-6
[»] chr3 (13 HSPs)
chr3 (5-143)||(2506917-2507055)
chr3 (28-140)||(797780-797892)
chr3 (9-143)||(3400796-3400930)
chr3 (34-106)||(9508083-9508155)
chr3 (34-106)||(9516058-9516130)
chr3 (13-136)||(796880-797006)
chr3 (78-143)||(3253488-3253553)
chr3 (9-143)||(668631-668765)
chr3 (37-143)||(3259741-3259847)
chr3 (28-101)||(8994533-8994606)
chr3 (28-91)||(10921532-10921595)
chr3 (35-104)||(10938348-10938417)
chr3 (35-104)||(31287265-31287334)
[»] chr6 (1 HSPs)
chr6 (9-143)||(18714712-18714846)
[»] scaffold0149 (1 HSPs)
scaffold0149 (28-142)||(25646-25760)
[»] chr8 (3 HSPs)
chr8 (34-143)||(22931501-22931610)
chr8 (9-136)||(24061089-24061219)
chr8 (34-101)||(24376570-24376637)
[»] scaffold2125 (1 HSPs)
scaffold2125 (9-143)||(287-421)
[»] scaffold0888 (1 HSPs)
scaffold0888 (33-105)||(2583-2655)
[»] chr2 (1 HSPs)
chr2 (32-97)||(20503559-20503624)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 2e-68; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 2e-68
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 2507055 - 2506917
Alignment:
Q  5 acacacatatattacaaaagagagaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaa 104  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2507055 acacacatatattacaaaagagagagggaaatatggctaaaattgtcaattttgtttatagtatgattgtctttcttttcctatttctggttgcaacgaa 2506956  T
Q  105 ggctgcacgtaagtcatttctaaccatttaaatttttct 143  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2506955 ggctgcacgtaagtcatttctaaccatttaaatttttct 2506917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 797780 - 797892
Alignment:
Q  28 gaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaaggctgcacgtaagtcatttctaa 127  Q
    |||||||||||||||||||||||||||| |||||||||||||||| | ||||| | |||||||||||||||||||||||||| ||||||| ||||| |||    
T  797780 gaggaaaatatggctaaaattgtcaattatgtttatagtatgattatttttctgttcctatttctggttgcaacgaaggctgaacgtaagccatttataa 797879  T
Q  128 ccatttaaatttt 140  Q
    || || |||||||    
T  797880 cctttaaaatttt 797892  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 3400930 - 3400796
Alignment:
Q  9 acatatattacaaaagagagaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaaggct 108  Q
    |||||||||||||  ||  |||| | ||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||  ||||||||| ||| |||    
T  3400930 acatatattacaagcgaaggagggagatatggctaaatttgtcaattttgtttatagtatgattatctttctatccctattggtggttgcaatgaatgct 3400831  T
Q  109 gcacgtaagtcatttctaaccatttaaatttttct 143  Q
      ||||||| ||||| |||||||||||| ||||||    
T  3400830 aaacgtaagccatttttaaccatttaaaattttct 3400796  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 9508155 - 9508083
Alignment:
Q  34 aatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaagg 106  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||    
T  9508155 aatatggctaaaattgtcaattttgtttatagtatgattatctttgtttccctatttttggttgcaacgaagg 9508083  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 9516130 - 9516058
Alignment:
Q  34 aatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaagg 106  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||    
T  9516130 aatatggctaaaattgtcaattttgtttatagtatgattatctttgtttccctatttttggttgcaacgaagg 9516058  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 796880 - 797006
Alignment:
Q  13 atattacaaaagagagaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaa---ggctg 109  Q
    ||||||||||  | ||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||| ||   |||||    
T  796880 atattacaaacaaaagagggaaacatggctaaaattgtctattttgtttatagtatgattatctttctttccctatttctagttacaacaaaggcggctg 796979  T
Q  110 cacgtaagtcatttctaaccatttaaa 136  Q
     |||||||  ||||||||| |||||||    
T  796980 aacgtaagctatttctaactatttaaa 797006  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 3253553 - 3253488
Alignment:
Q  78 tctttccctatttctggttgcaacgaaggctgcacgtaagtcatttctaaccatttaaatttttct 143  Q
    ||||||| ||||||||||||||||||| |||  |||||||||||||||||||||||||| ||||||    
T  3253553 tctttccttatttctggttgcaacgaatgctcaacgtaagtcatttctaaccatttaaaattttct 3253488  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 668631 - 668765
Alignment:
Q  9 acatatattacaaaagagagaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaaggct 108  Q
    |||||||||| |||  | ||||| ||||||| |||||| ||| |||||  ||||||||||| || | ||| ||||||||||| ||||||||| | || |     
T  668631 acatatattataaacaaaagagggaaatatgactaaaagtgttaatttcatttatagtatggttatttttatttccctatttatggttgcaatgcagacc 668730  T
Q  109 gcacgtaagtcatttctaaccatttaaatttttct 143  Q
      ||||||||||||| |||||||||||| ||||||    
T  668731 caacgtaagtcatttttaaccatttaaaattttct 668765  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 3259847 - 3259741
Alignment:
Q  37 atggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaaggctgcacgtaagtcatttctaaccatttaaa 136  Q
    ||||||||| |||||| | |||||| |||| ||||| ||||||| |||  |||||||||||||  |||  ||  ||||||| ||||||||||||||||||    
T  3259847 atggctaaatttgtcattgttgtttgtagtgtgattatctttctatcctcatttctggttgcagagaattctcaacgtaagccatttctaaccatttaaa 3259748  T
Q  137 tttttct 143  Q
     ||||||    
T  3259747 attttct 3259741  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 8994606 - 8994533
Alignment:
Q  28 gaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaac 101  Q
    |||| ||| ||| ||| ||||||||||||||||| | |||||||| |||||||||||  |||| ||||||||||    
T  8994606 gagggaaacatgactacaattgtcaattttgtttgtggtatgattatctttctttccgaatttatggttgcaac 8994533  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 10921595 - 10921532
Alignment:
Q  28 gaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttc 91  Q
    |||||||||||| ||||||||||||| ||| |||||  ||||||| || |||||||||| ||||    
T  10921595 gaggaaaatatgactaaaattgtcaagtttatttatgttatgattatcattctttccctctttc 10921532  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 10938417 - 10938348
Alignment:
Q  35 atatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaa 104  Q
    |||||||||||||| |||| |||||||||  ||||||| || || ||||| | ||||| |||||||||||    
T  10938417 atatggctaaaattatcaagtttgtttatgttatgattatcattatttccttctttctagttgcaacgaa 10938348  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 31287265 - 31287334
Alignment:
Q  35 atatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaa 104  Q
    ||||||||||||||||||| ||| |||||  ||||||| |||||||||| | |||| | ||| |||||||    
T  31287265 atatggctaaaattgtcaagtttatttatcttatgattatctttctttctccatttttagtttcaacgaa 31287334  T

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Target: chr6 (Bit Score: 79; Significance: 3e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 18714712 - 18714846
Alignment:
Q  9 acatatattacaaaagagagaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaaggct 108  Q
    ||||||||||||||  |  |||| | |||||||||||||| ||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||||| |||    
T  18714712 acatatattacaaacaaaggagggagatatggctaaaattatcaattttgtttataatatgattatctttttttccttatttctggttgcaacgaatgct 18714811  T
Q  109 gcacgtaagtcatttctaaccatttaaatttttct 143  Q
    | | |||||||||||||||||||||||||||||||    
T  18714812 ggaggtaagtcatttctaaccatttaaatttttct 18714846  T

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Target: scaffold0149 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 28 - 142
Target Start/End: Original strand, 25646 - 25760
Alignment:
Q  28 gaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaaggctgcacgtaagtcatttctaa 127  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||   |||| | |||||||||||||||||    
T  25646 gagggaaatatggttaaaattgtcatttttgtttatagtatgattatctttctttccctatctctggttgcaatagaggccggacgtaagtcatttctaa 25745  T
Q  128 ccatttaaatttttc 142  Q
    ||||||||| |||||    
T  25746 ccatttaaaattttc 25760  T

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Target: chr8 (Bit Score: 70; Significance: 6e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 22931610 - 22931501
Alignment:
Q  34 aatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaaggctgcacgtaagtcatttctaaccattt 133  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| | ||||  ||||| |||||||||    
T  22931610 aatatggctaaaattgccaattttgtttatagtatgattatctttctttccctatttttggttgcaacaaaggctgaatgtaaaacatttttaaccattt 22931511  T
Q  134 aaatttttct 143  Q
    ||| ||||||    
T  22931510 aaaattttct 22931501  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 24061089 - 24061219
Alignment:
Q  9 acatatattacaaaagagagaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaaggct 108  Q
    ||||||||||||||  |  |||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| ||    
T  24061089 acatatattacaaacaaaggagggaaatatggctaaaattgtcaattttctttatagtatgattatctttctttccctatttctagttgcaacgaagtct 24061188  T
Q  109 g---cacgtaagtcatttctaaccatttaaa 136  Q
    |   || ||||| ||||| ||||||||||||    
T  24061189 gaaccaggtaagccatttttaaccatttaaa 24061219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 24376570 - 24376637
Alignment:
Q  34 aatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaac 101  Q
    |||||||||||||||||||| | |||||||  ||| ||| |||| ||||| |||||||| ||||||||    
T  24376570 aatatggctaaaattgtcaagtatgtttatgttattattatcttcctttctctatttcttgttgcaac 24376637  T

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Target: scaffold2125 (Bit Score: 63; Significance: 9e-28; HSPs: 1)
Name: scaffold2125
Description:

Target: scaffold2125; HSP #1
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 287 - 421
Alignment:
Q  9 acatatattacaaaagagagaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaaggct 108  Q
    ||||||||||||||  | ||||  | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||| ||| || |||    
T  287 acatatattacaaacaaaagagagatatatggctaaaattgtcaattttatttatagtatgattatctttctttccctatttctagttgaaacaaatgct 386  T
Q  109 gcacgtaagtcatttctaaccatttaaatttttct 143  Q
      | ||||| ||||||| |||||||||| ||||||    
T  387 caatgtaagccatttcttaccatttaaaattttct 421  T

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Target: scaffold0888 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 2583 - 2655
Alignment:
Q  33 aaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaag 105  Q
    ||||||| ||||| |||| |||||| |||||||||||||| |||||||||  ||||||| |||||||||||||    
T  2583 aaatatgactaaagttgttaattttatttatagtatgattatctttctttttctatttccggttgcaacgaag 2655  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 20503559 - 20503624
Alignment:
Q  32 aaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttg 97  Q
    |||| |||||||||||| |||| |||||||||| ||||||  | ||| ||||||||||||| ||||    
T  20503559 aaaaaatggctaaaattctcaaatttgtttatattatgatcctttttatttccctatttcttgttg 20503624  T

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