View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4589_high_10 (Length: 236)
Name: NF4589_high_10
Description: NF4589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4589_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 4738799 - 4738923
Alignment:
| Q |
22 |
tttcaaaagaaacattatatacaattttataaacaaataatgtcaaaaaccttattgaaactccctcnnnnnnngggttttcaccatattcaataaaatt |
121 |
Q |
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| T |
4738799 |
tttcaaaagaaacattatatacaattttataaataaataatgtcaaaaaccttattcaaactccctctttttttgggttttcaccatattcaataaaaat |
4738898 |
T |
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| Q |
122 |
atcgttcttgatttatttgaacatt |
146 |
Q |
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| T |
4738899 |
atcattcttgatttatttgaacatt |
4738923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 4738921 - 4738965
Alignment:
| Q |
175 |
attcatgctataaaagaggttttttccattccattcgcatgaacc |
219 |
Q |
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| T |
4738921 |
attcatgctataaaagagggtttttccattccattcacatgaacc |
4738965 |
T |
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