View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4589_high_11 (Length: 232)
Name: NF4589_high_11
Description: NF4589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4589_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 21055778 - 21055567
Alignment:
| Q |
1 |
aaagccaaagaatccatttgtaatatttatgaaaatggnnnnnnncttgttg---aggtctaataccatgtttatgcatgagtttcattttaacatagta |
97 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21055778 |
aaagccaaagaatccatttgtaatatttatgaaaatggtttttttcttgttgttgaggtctaataccatgtttatgcatgagtttcattttaacatagta |
21055679 |
T |
|
| Q |
98 |
tccnnnnnnnnnnnnnnnnnnnnncttgtgattctgatccatttcattgattgaacnnnnnnnctataagaaggtgaagggaaagagattgaaggtgaag |
197 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21055678 |
tcctttgttttttgagggttttttcttgtgattctgatccatttcattgattgaaaaaaaaaactataagaaggtgaagggaaagagattgaaggtgaag |
21055579 |
T |
|
| Q |
198 |
gatgttgagagg |
209 |
Q |
| |
|
|||||||||||| |
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|
| T |
21055578 |
gatgttgagagg |
21055567 |
T |
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