View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4589_high_3 (Length: 499)
Name: NF4589_high_3
Description: NF4589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4589_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 20 - 493
Target Start/End: Complemental strand, 4091512 - 4091039
Alignment:
| Q |
20 |
atccagatttcactgacctccattggtttagaaataagcctaccagatacatcaacgcagatgacagttaccaaccccatggttgtacaagcagataaat |
119 |
Q |
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| T |
4091512 |
atccagatttcactgacctccattggtttagaaataagcctaccagatacatcaacgcagatgacagttaccaaccccatggttgtacaagcagataaat |
4091413 |
T |
|
| Q |
120 |
cattaaaaacagcttcttcgtctggcactacatcattaatgtggtaatggagagaaaaagtaaccataagtggcattccatgttgcacaaacaatattgc |
219 |
Q |
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| T |
4091412 |
cattaaaaacagcttcttcgtctggcactacatcattaatgtggtaatggagagaaaaagtaaccatacgtggcattccatgttgcacaaacaatattgc |
4091313 |
T |
|
| Q |
220 |
agctgtaaaaacacatgctagaatggaaatccttcctcttggtctcaacaaaatattctcaaggagttccatcaacaagccaactgaaactttcatatct |
319 |
Q |
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| T |
4091312 |
agctgtaaaaacacatgctagaatggaaatccttcctcttggtctcaacaaaatattctcaaggagttccatcaacaagccaactgaaactttcatatct |
4091213 |
T |
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| Q |
320 |
ggcaatccatcaccatctccatctttttcacaaattaggtgaatgaacaccacaaatgcaaccaatgtaaagataaaaagagaagctttgtcaaggtagg |
419 |
Q |
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| T |
4091212 |
ggcaatccatcaccatctccatctttttcacaaatttggtgaatgaacaccacaaatgcaaccaatgtaaagataaaaagagaagctttgtcaaggtagg |
4091113 |
T |
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| Q |
420 |
aaatcggcttctcaattagtttttccaaaaggcctctcttttcaaaatgagaactcattgagcagttcatctca |
493 |
Q |
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| T |
4091112 |
aaatcggcttctcaattagtttttccaaaaggcctctcttttcaaagtgagaactcattgagcagttcatctca |
4091039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 62 - 450
Target Start/End: Original strand, 42593314 - 42593711
Alignment:
| Q |
62 |
ccagatacatcaacgcagatgacagttaccaaccccatggttgtacaagcagataaatcattaaaaacagcttcttcgtctggcactacatcattaatgt |
161 |
Q |
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||||||||||| | |||||||||||||||||||||||| |||||||||| || |||||||||| ||| ||||||| || |||||| | || | | | |
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| T |
42593314 |
ccagatacatcgatgcagatgacagttaccaaccccattgttgtacaagttgacaaatcattaagaacggcttcttgatccaacactaccttatcattct |
42593413 |
T |
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| Q |
162 |
ggtaatggagagaaaaagtaaccataagtggcattccatgttgcacaaacaatattgcagctgtaaaaacacatgctagaatggaaatccttcctcttgg |
261 |
Q |
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| T |
42593414 |
ggtaatggagagaaagagtaaccataattggcactccatgttgcacacacagtattacaacactaaaaagacctgccaaaatggaaatccttcctcgtgg |
42593513 |
T |
|
| Q |
262 |
tctcaacaaaatattctcaaggagttccatcaacaagccaactgaaac---------tttcatatctggcaatccatcaccatctccatctttttcacaa |
352 |
Q |
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| T |
42593514 |
tctcgagaaaatattctcaaggagttgtgtcaataagccaactgaaacattattacctttaatatctggcaaccctcctccatccacatcttttttacat |
42593613 |
T |
|
| Q |
353 |
attaggtgaatgaacaccacaaatgcaaccaatgtaaagataaaaagagaagctttgtcaaggtaggaaatcggcttctcaattagtttttccaaaag |
450 |
Q |
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|||||| ||||||||| ||||| |||||| | |||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
42593614 |
attaggcgaatgaacaacacaagtgcaacaagtgtaaagacaaaaagagaagctttgtcaaggtaggaaattggcttctcaattagactttccaaaag |
42593711 |
T |
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