View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4589_high_5 (Length: 453)
Name: NF4589_high_5
Description: NF4589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4589_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 15 - 435
Target Start/End: Original strand, 26133271 - 26133692
Alignment:
| Q |
15 |
tcataaccaatggacaactatggaacttccaaaagaatcttgttgttcctgagttcttcattacaaaaattaaggttagtatagactccatggttccttt |
114 |
Q |
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| T |
26133271 |
tcataaccaatggacaactatggaatttccaaaggaatcttgttgttcctgagttcttcattacaaaaattaaggttagtatagactccatggttccttt |
26133370 |
T |
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| Q |
115 |
ataattgtcgtatttgtagggaaattttgt-cgttgtttttaaagtttaatacaacattaacgattggtttatcaatgatatcatataatgtatgttttg |
213 |
Q |
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| T |
26133371 |
ataattgtcgtatttgtagggaaattttgttcgttgtttttaaagtttaatacaacattaacgattggtttatcaatgatatcatataatgtatgttttt |
26133470 |
T |
|
| Q |
214 |
gtttattttatgtagaacatgatagatattatggaaggatctaccttggaaattatcaaacaatgggagagttgcataacaaaaaataacgggattgcag |
313 |
Q |
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| T |
26133471 |
gtttattttatgtagaacatgatagatattatggaaggatctaccctggaaattatcaaacaatgggataattgcatagcaaaaaataaagggattgcag |
26133570 |
T |
|
| Q |
314 |
agatagtgattgaaacagatctaaagattctttttgaggatatcatttcgagaacttgttttggcagcgattacgcacaaggaaagcaaatttttgcaaa |
413 |
Q |
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| T |
26133571 |
agatagtgattgaaacagatctaaagattctttttgaggatatcatttcgagagcttgttttggcagcgattatgcacaaggaaggcaaatttttgcaaa |
26133670 |
T |
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| Q |
414 |
attggctgctatgcaagctgct |
435 |
Q |
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| T |
26133671 |
attggctgctatgcaagctgct |
26133692 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 431
Target Start/End: Complemental strand, 25930005 - 25929814
Alignment:
| Q |
243 |
tatggaaggatctaccttggaaattatcaaacaatgggagagttgcataacaaaaaataacg---ggattgcagagatagtgattgaaacagatctaaag |
339 |
Q |
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| T |
25930005 |
tatggaagaatctgctttggaaattatcaaaaaatgggagaggtgtataacagaaagcaaagaaggtattgcagagatagtgattgaaagtgacctgaaa |
25929906 |
T |
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| Q |
340 |
attctttttgaggatatcatttcgagaacttgttttggcagcgattacgcacaaggaaagcaaatttttgcaaaattggctgctatgcaagc |
431 |
Q |
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| T |
25929905 |
gttctttcagaggatattatttcaaaagcatgctttggcagtgattatacacaaggaaaacatatttttgaaagattgaatgctattcaagc |
25929814 |
T |
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