View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4589_low_1 (Length: 614)
Name: NF4589_low_1
Description: NF4589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4589_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 11 - 598
Target Start/End: Complemental strand, 42208382 - 42207796
Alignment:
| Q |
11 |
gagatgaaatcacagagaaaatatttctacttgcgggtgcaatctgtaaatacttgaaattgcattgaaggcctgaatcaaacctttacattatgaatga |
110 |
Q |
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| T |
42208382 |
gagatgaaatcacagagaaaatatttctacttgcgggtgcaatctgtaaatacttgaaattgcattgaaggcctgaatcaaacctttacattatgaatga |
42208283 |
T |
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| Q |
111 |
agagtttgtaatgcattttactttgtggtcattgattaaaacaaagtaagcatgtttggtatcacggtgagtttgtaaaatttgccgaaatgattttgcc |
210 |
Q |
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| T |
42208282 |
agagtttgtaatgcattttactttgtggtcattgattaaaacaaagtaagcatgtttggtatcacggtgagtttgtaaaatttgccgaaatgatttcgcc |
42208183 |
T |
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| Q |
211 |
aacccaactaaattgcaaatatgcatttaagtcatcaatcttttcataccgtcggatttggggttactagagtcatatatgctacccttatcaatttatg |
310 |
Q |
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| T |
42208182 |
aacccaactaaatggcaaatattcatttaagtcatcaatcttttcataccgtcggatttggggttactagagtcatatatgctacccttatcaa-ttatg |
42208084 |
T |
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| Q |
311 |
aaataagactccatcccgcactgattcacagtcttgtagggtttattattaccctgtaaaattttaacttacaaaattgaaggttcacttttatttgaag |
410 |
Q |
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| T |
42208083 |
aaataagactccatcccgcactgattcacagtcttgtagggtttatcattaccctgtaaaattttaacttacaaaattgaaggttcacttttatttgaag |
42207984 |
T |
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| Q |
411 |
cagaagattgaatgttcttgaataaccaagaacacgaaaataggtaacccaacatcgttcccaataggcatcaattataaaccattagtggaaacaacgt |
510 |
Q |
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| T |
42207983 |
cagaagattgaatgttcttgaataaccaagaacacgaaaataggtaacccaacatcattcccaataggcatcaattataaaccgttagtggaaacaacgt |
42207884 |
T |
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| Q |
511 |
gggaaactccattatggtaacaactaacaaatgtaaaatatctttcaannnnnnncatgccaaacagggtcttggcagagagtaagtt |
598 |
Q |
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| T |
42207883 |
gggaaactccattatggtaacaactaacaaatgtaaaatatctttcaattttttttatgccaaacagggtcttggcagagagtaagtt |
42207796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 441
Target Start/End: Complemental strand, 42207775 - 42207742
Alignment:
| Q |
408 |
aagcagaagattgaatgttcttgaataaccaaga |
441 |
Q |
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| T |
42207775 |
aagcagaagattgaatgttcttgaataatcaaga |
42207742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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