View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4589_low_11 (Length: 239)

Name: NF4589_low_11
Description: NF4589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4589_low_11
NF4589_low_11
[»] chr4 (1 HSPs)
chr4 (1-220)||(21238870-21239089)
[»] chr1 (10 HSPs)
chr1 (67-222)||(3374065-3374220)
chr1 (1-133)||(4333500-4333632)
chr1 (67-134)||(3217166-3217233)
chr1 (67-218)||(3380195-3380346)
chr1 (65-134)||(1794136-1794205)
chr1 (66-135)||(2007929-2007998)
chr1 (65-148)||(3364039-3364122)
chr1 (65-135)||(2947195-2947265)
chr1 (77-132)||(2021069-2021124)
chr1 (83-135)||(3353423-3353475)
[»] chr2 (4 HSPs)
chr2 (65-127)||(20936183-20936245)
chr2 (12-220)||(20924480-20924688)
chr2 (65-127)||(20954424-20954486)
chr2 (65-135)||(39275317-39275387)
[»] chr5 (1 HSPs)
chr5 (12-135)||(17971162-17971285)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 21239089 - 21238870
Alignment:
Q  1 cttctcccgatgctctcttgaacctaataagttctgtgaccaattctggtctaacatttccaagaggcttcacagtcatcttttctaacataggagaatt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21239089 cttctcccgatgcactcttgaacctaataagttctgtgaccaattctggtctaacatttccaagaggcttcacagtcatcttttctaacataggagaatt 21238990  T
Q  101 gagaagtagaaatctgataaaatctaactcagattgaaaaccagagattatgtctattgttacatcttgcactttgaggggcatgtctggccgggaaaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21238989 gagaagtagaaatctgataaaatctaactcagattgaaaaccagagattatgtctattgttacatgttgcactttgaggggcatgtctggccgggaaaag 21238890  T
Q  201 atatcttcccaacaatagga 220  Q
    ||||||||||||||||||||    
T  21238889 atatcttcccaacaatagga 21238870  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 222
Target Start/End: Complemental strand, 3374220 - 3374065
Alignment:
Q  67 gcttcacagtcatcttttctaacataggagaattgagaagtagaaatctgataaaatctaactcagattgaaaaccagagattatgtctattgttacatc 166  Q
    |||||||| |||||||||||| || ||||||||   |||||||||| |  ||||||||||| || |||   | |||||||||    |||||||| ||||     
T  3374220 gcttcacaatcatcttttctagcacaggagaatatcgaagtagaaaccgaataaaatctaattctgatctgataccagagatgccatctattgtcacatg 3374121  T
Q  167 ttgcactttgaggggcatgtctggccgggaaaagatatcttcccaacaataggatg 222  Q
    ||| ||||  | ||||||| ||||||  ||||||||||||||||||||||||||||    
T  3374120 ttgtacttgaatgggcatggctggccctgaaaagatatcttcccaacaataggatg 3374065  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 4333500 - 4333632
Alignment:
Q  1 cttctcccgatgctctcttgaacctaataagttctgtgaccaattctggtctaacatttccaagaggcttcacagtcatcttttctaacataggagaatt 100  Q
    |||||||||||||||| ||||||| ||| ||| || | | ||| || ||| |||| ||| ||| |||||||||| |||||||||||| ||   ||||||     
T  4333500 cttctcccgatgctcttttgaaccgaattagtgctttcatcaactccggtataacgtttgcaacaggcttcacaatcatcttttctagcaccagagaata 4333599  T
Q  101 gagaagtagaaatctgataaaatctaactcaga 133  Q
     ||||||||||||||||| |||| ||| |||||    
T  4333600 tagaagtagaaatctgatcaaatttaattcaga 4333632  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 3217166 - 3217233
Alignment:
Q  67 gcttcacagtcatcttttctaacataggagaattgagaagtagaaatctgataaaatctaactcagat 134  Q
    ||||||| ||||||||||||| ||| |||||||  | |||||||||||||||||||||||| ||||||    
T  3217166 gcttcaccgtcatcttttctagcatgggagaatacataagtagaaatctgataaaatctaattcagat 3217233  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 218
Target Start/End: Complemental strand, 3380346 - 3380195
Alignment:
Q  67 gcttcacagtcatcttttctaacataggagaattgagaagtagaaatctgataaaatctaactcagattgaaaaccagagattatgtctattgttacatc 166  Q
    |||||||| |||||||||||| ||||||||||| |||||||||||| |  ||||||||||| || ||||  | |||||||||    |||||||| ||||     
T  3380346 gcttcacaatcatcttttctagcataggagaatagagaagtagaaaccgaataaaatctaattccgatttgataccagagatgtcatctattgtcacatg 3380247  T
Q  167 ttgcactttgaggggcatgtctggccgggaaaagatatcttcccaacaatag 218  Q
    | |||||   | |||  || ||||||  ||||||||| ||||||||||||||    
T  3380246 tcgcactcgaatgggattgactggccttgaaaagataacttcccaacaatag 3380195  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 1794205 - 1794136
Alignment:
Q  65 aggcttcacagtcatcttttctaacataggagaattgagaagtagaaatctgataaaatctaactcagat 134  Q
    ||||||||||||||| | |||||  | ||||||||  |||||||||||||||||||||||||| ||||||    
T  1794205 aggcttcacagtcatatgttctaggacaggagaatatagaagtagaaatctgataaaatctaattcagat 1794136  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 2007998 - 2007929
Alignment:
Q  66 ggcttcacagtcatcttttctaacataggagaattgagaagtagaaatctgataaaatctaactcagatt 135  Q
    ||||||||  |||||||||||| || ||| |||| ||||||||||||||| ||||||||||| |||||||    
T  2007998 ggcttcactctcatcttttctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatt 2007929  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 3364122 - 3364039
Alignment:
Q  65 aggcttcacagtcatcttttctaacataggagaattgagaagtagaaatctgataaaatctaactcagattgaaaaccagagat 148  Q
    ||||| |||| ||||||||||||  | ||||||||  | ||| |||||||||||||||||||| ||||||| ||| ||||||||    
T  3364122 aggctccacaatcatcttttctagtacaggagaatataaaagcagaaatctgataaaatctaattcagatttaaagccagagat 3364039  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 2947195 - 2947265
Alignment:
Q  65 aggcttcacagtcatcttttctaacataggagaattgagaagtagaaatctgataaaatctaactcagatt 135  Q
    ||||| |||| ||| |||||||| ||| |||||||  ||||| |||||||||||||||||||| |||||||    
T  2947195 aggctccacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatt 2947265  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 2021124 - 2021069
Alignment:
Q  77 catcttttctaacataggagaattgagaagtagaaatctgataaaatctaactcag 132  Q
    ||||||||||| |||||| |||| ||||||||||||||| | ||||||||| ||||    
T  2021124 catcttttctagcataggcgaatagagaagtagaaatctcaaaaaatctaattcag 2021069  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 3353475 - 3353423
Alignment:
Q  83 ttctaacataggagaattgagaagtagaaatctgataaaatctaactcagatt 135  Q
    ||||| ||| |||||||  ||||| |||||||||||||||||||| |||||||    
T  3353475 ttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatt 3353423  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 20936245 - 20936183
Alignment:
Q  65 aggcttcacagtcatcttttctaacataggagaattgagaagtagaaatctgataaaatctaa 127  Q
    ||||||||||||||||||||||| || ||||||||  |||||||||||| |||||||||||||    
T  20936245 aggcttcacagtcatcttttctagcacaggagaatatagaagtagaaatttgataaaatctaa 20936183  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 20924688 - 20924480
Alignment:
Q  12 gctctcttgaacctaataagttctgtgaccaattctggtctaacatttccaagaggcttcacagtcatcttttctaacataggagaattgagaagtagaa 111  Q
    |||||| ||||||  || |||||||| | ||| || ||| | || ||| ||| ||||| |||| |||||||||  | || ||| |||| |||||||||||    
T  20924688 gctctcctgaaccggattagttctgttatcaactccggtttgacgttttcaacaggctccacaatcatctttttgagcacaggtgaatagagaagtagaa 20924589  T
Q  112 atctgataaaatctaactcagattgaaaaccagagattatgtctattgttacatcttgcactttgaggggcatgtctggccgggaaaagatatcttccca 211  Q
    |||||||||||||||| |||||||    |||||||||    | |||    |||| ||||| ||||||| |||| ||||||   |||||||||||||||||    
T  20924588 atctgataaaatctaattcagatttggtaccagagatgtcttgtatctccacatgttgcaatttgaggagcatatctggctccgaaaagatatcttccca 20924489  T
Q  212 acaatagga 220  Q
    |||||||||    
T  20924488 acaatagga 20924480  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 20954486 - 20954424
Alignment:
Q  65 aggcttcacagtcatcttttctaacataggagaattgagaagtagaaatctgataaaatctaa 127  Q
    |||||||| |||||||||||||| ||| |||||||  |||||||||||| |||||||||||||    
T  20954486 aggcttcagagtcatcttttctagcatgggagaatatagaagtagaaatttgataaaatctaa 20954424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 39275387 - 39275317
Alignment:
Q  65 aggcttcacagtcatcttttctaacataggagaattgagaagtagaaatctgataaaatctaactcagatt 135  Q
    |||||||||| |||| ||||||| |||||||||||  |  || |||||| ||||||||||||| |||||||    
T  39275387 aggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatt 39275317  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 17971285 - 17971162
Alignment:
Q  12 gctctcttgaacctaataagttctgtgaccaattctggtctaacatttccaagaggcttcacagtcatcttttctaacataggagaattgagaagtagaa 111  Q
    |||||| ||||||| || |||||||| | ||| || ||| | |||||| ||  ||||||||||||||||||||  |  | ||||||||   |||||||||    
T  17971285 gctctcctgaacctgatcagttctgtcatcaactcgggtttgacattttcagcaggcttcacagtcatcttttgaagaacaggagaatattgaagtagaa 17971186  T
Q  112 atctgataaaatctaactcagatt 135  Q
    |||| || |||||||| |||||||    
T  17971185 atctaatgaaatctaattcagatt 17971162  T

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