View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4589_low_3 (Length: 527)

Name: NF4589_low_3
Description: NF4589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4589_low_3
NF4589_low_3
[»] chr7 (36 HSPs)
chr7 (19-509)||(22028428-22028918)
chr7 (247-509)||(22019153-22019415)
chr7 (167-440)||(22036955-22037231)
chr7 (227-440)||(22021261-22021474)
chr7 (223-300)||(22039955-22040032)
chr7 (229-369)||(18326161-18326301)
chr7 (253-354)||(16846478-16846579)
chr7 (253-354)||(16839395-16839496)
chr7 (243-352)||(26256732-26256841)
chr7 (241-356)||(1985957-1986072)
chr7 (241-356)||(15571897-15572012)
chr7 (237-352)||(19344573-19344688)
chr7 (241-307)||(15443966-15444032)
chr7 (19-113)||(22019562-22019656)
chr7 (241-307)||(24002201-24002267)
chr7 (241-310)||(14076677-14076746)
chr7 (241-310)||(14386705-14386774)
chr7 (19-64)||(22011108-22011153)
chr7 (241-308)||(660849-660916)
chr7 (241-308)||(26217968-26218035)
chr7 (241-307)||(24010385-24010451)
chr7 (237-313)||(19351067-19351143)
chr7 (237-313)||(19357906-19357982)
chr7 (237-320)||(19779591-19779674)
chr7 (237-320)||(19887709-19887792)
chr7 (241-300)||(24035760-24035819)
chr7 (241-308)||(26230218-26230285)
chr7 (249-315)||(13888104-13888170)
chr7 (257-315)||(20338918-20338976)
chr7 (241-315)||(22063636-22063710)
chr7 (241-307)||(23993537-23993603)
chr7 (241-321)||(18514789-18514869)
chr7 (241-310)||(20058059-20058128)
chr7 (19-64)||(22021640-22021685)
chr7 (236-320)||(29454100-29454184)
chr7 (257-309)||(36263053-36263105)
[»] chr2 (9 HSPs)
chr2 (234-352)||(10205439-10205557)
chr2 (235-316)||(18908805-18908886)
chr2 (235-356)||(18913553-18913674)
chr2 (235-316)||(18920761-18920842)
chr2 (241-314)||(554471-554544)
chr2 (241-318)||(25377065-25377142)
chr2 (241-321)||(14514888-14514968)
chr2 (260-309)||(20980604-20980653)
chr2 (255-310)||(20975557-20975612)
[»] chr4 (12 HSPs)
chr4 (241-353)||(53774796-53774908)
chr4 (241-320)||(3557715-3557794)
chr4 (241-315)||(11970984-11971058)
chr4 (241-318)||(6372436-6372513)
chr4 (243-315)||(837770-837842)
chr4 (241-321)||(10553548-10553628)
chr4 (241-315)||(3565738-3565812)
chr4 (241-315)||(11981685-11981759)
chr4 (241-318)||(6392812-6392892)
chr4 (241-306)||(10571278-10571343)
chr4 (237-310)||(53790552-53790625)
chr4 (241-277)||(3560960-3560996)
[»] chr6 (8 HSPs)
chr6 (241-356)||(6947882-6947997)
chr6 (241-315)||(6921352-6921426)
chr6 (238-352)||(6954518-6954632)
chr6 (241-356)||(20770603-20770718)
chr6 (241-352)||(6935220-6935331)
chr6 (255-313)||(14749393-14749451)
chr6 (241-294)||(17369679-17369732)
chr6 (249-309)||(24950154-24950214)
[»] chr5 (7 HSPs)
chr5 (235-321)||(29597548-29597634)
chr5 (235-352)||(29647633-29647750)
chr5 (262-314)||(28763928-28763980)
chr5 (257-320)||(24330917-24330980)
chr5 (249-303)||(18964840-18964894)
chr5 (237-315)||(29642353-29642431)
chr5 (309-445)||(3234005-3234141)
[»] chr3 (4 HSPs)
chr3 (237-356)||(32578863-32578982)
chr3 (255-321)||(25901295-25901361)
chr3 (255-321)||(25915313-25915379)
chr3 (235-320)||(3625723-3625808)
[»] chr1 (5 HSPs)
chr1 (241-310)||(50645487-50645556)
chr1 (241-309)||(4570927-4570995)
chr1 (241-320)||(10218974-10219053)
chr1 (257-320)||(21855401-21855464)
chr1 (249-309)||(39379071-39379131)
[»] scaffold0064 (1 HSPs)
scaffold0064 (249-308)||(24206-24265)
[»] scaffold0464 (1 HSPs)
scaffold0464 (237-321)||(8049-8133)


Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 19 - 509
Target Start/End: Complemental strand, 22028918 - 22028428
Alignment:
Q  19 gaacttactttcaatgacacaaaacttggctttcaacataattcttcgcatagagcctatcacgttggccattagtaattgtaattcgctctacactgcc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22028918 gaacttactttcaatgacacaaaactaggctttcaacataattcttcgcatagagcctatcacgttggccattagtaattgcaattcgctctacactgcc 22028819  T
Q  119 atctcttaaattaacgacaattggtttgcttccaagatagctttgcaatatcagtgtatcgtaatttttagaaaggtacaatggaaagcatggcaatgac 218  Q
    |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  22028818 atctcttaaattaacgacaattggtaggcttccaagatagctttccaatatcagtgtatcgtgatttttagaaaggtgcaatggaaagcatggcaatgac 22028719  T
Q  219 acatattttttcataatttgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttcct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22028718 acatattttttcataatttgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttcct 22028619  T
Q  319 tgaccacttcagaaaaacaaaggcaatccatcaacacaaatagtgatggctcgacatatggcttttgatcaaatcctcgaggggggaaaaactctttgta 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  22028618 tgaccacttcagaaaaacaaaggcaatccatcaacacaaatagtgatggcttgacatatggcttttgatcaaatcctcgagggggggaaaactctttgta 22028519  T
Q  419 tgtctctgtacccagatcaagtaaaatgattgtaacttgctcaaccgtgatatacctgggatcataataatcacatatgtaatcgcgaatt 509  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22028518 tgtctctgtacccagatcaagtgaaatgattgtaacttgctcaaccgtgatatacctgggatcataataatcacgtatgtaatcgcgaatt 22028428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 247 - 509
Target Start/End: Complemental strand, 22019415 - 22019153
Alignment:
Q  247 tcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaaaaacaaaggcaatc 346  Q
    ||||||||||| |||||||||| || ||||||| |||||||||| | |||| ||||||||||||  ||||||| || |  | | ||||||||||||||||    
T  22019415 tcttaagtaatggagtccaagaatcatcaactcaataatccgtcttcttccttataacaaaatgactttccttaacaagatgataaaaacaaaggcaatc 22019316  T
Q  347 catcaacacaaatagtgatggctcgacatatggcttttgatcaaatcctcgaggggggaaaaactctttgtatgtctctgtacccagatcaagtaaaatg 446  Q
    || ||  ||| |||||||||||| | ||  ||||  |||||||||||||||||| || |  |||||||||||||||||||| |||||||||||| |||||    
T  22019315 caccagtacacatagtgatggcttggcaagtggcacttgatcaaatcctcgaggcggaatcaactctttgtatgtctctgtccccagatcaagtgaaatg 22019216  T
Q  447 attgtaacttgctcaaccgtgatatacctgggatcataataatcacatatgtaatcgcgaatt 509  Q
    |||||||||||||||||||| |||| || ||| ||||||||||||  ||||||||||| ||||    
T  22019215 attgtaacttgctcaaccgtaatatccccgggctcataataatcagctatgtaatcgcaaatt 22019153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 167 - 440
Target Start/End: Complemental strand, 22037231 - 22036955
Alignment:
Q  167 tatcagtgtatcgtaatttttagaaaggtacaatggaaagcatggcaatgacacata---ttttttcataatttgaaaactaatcttaagtaattgagtc 263  Q
    |||||||||||| |||||||||||||||| |||||| |  |||| | |  || |||    |||||||| |||||||| | ||||||  ||||||||||||    
T  22037231 tatcagtgtatcataatttttagaaaggtgcaatggcacccatgccgaccactcatcaatttttttcagaatttgaagattaatctcgagtaattgagtc 22037132  T
Q  264 caagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaaaaacaaaggcaatccatcaacacaaatagtg 363  Q
    ||||| || ||| ||||||||||| |||| ||||||||||| |||||||||| |||||| |  | ||||||||||| |||||||||||||||| |||| |    
T  22037131 caagaatcatcatctccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaatgcaatccatcaacacacatagag 22037032  T
Q  364 atggctcgacatatggcttttgatcaaatcctcgaggggggaaaaactctttgtatgtctctgtacccagatcaagt 440  Q
    |||||||   | ||||   ||  ||||| ||||||||| | |  ||||||||| |||||||||||| ||||||||||    
T  22037031 atggctcataacatgggacttcgtcaaaacctcgagggagaagcaactctttgcatgtctctgtacgcagatcaagt 22036955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 227 - 440
Target Start/End: Complemental strand, 22021474 - 22021261
Alignment:
Q  227 tttcataatttgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccact 326  Q
    ||||| |||||||| | | || |||||||||||||||||||| |||||||||||||||||| |||| | ||||||||| |||||||||| ||| || |      
T  22021474 tttcagaatttgaagattgattttaagtaattgagtccaagattcttcaactccataatccatcatctgccatataaccaaatgggttttcttcacaaga 22021375  T
Q  327 tcagaaaaacaaaggcaatccatcaacacaaatagtgatggctcgacatatggcttttgatcaaatcctcgaggggggaaaaactctttgtatgtctctg 426  Q
    | ||||||||||| |||||||||||||||| |||| |||||||| | |  |||   || |||||| ||||| ||| | |  ||||||||| ||||||| |    
T  22021374 tgagaaaaacaaatgcaatccatcaacacacatagagatggctcaaaacttgggacttcatcaaaacctcgcgggagaagcaactctttgcatgtctccg 22021275  T
Q  427 tacccagatcaagt 440  Q
    |||| |||||||||    
T  22021274 taccaagatcaagt 22021261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 22040032 - 22039955
Alignment:
Q  223 attttttcataatttgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccata 300  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  22040032 attttttcataatttgaaaattaatcttaagtaattgagtccaagactcttcaactccataatctgtcatcttccata 22039955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 229 - 369
Target Start/End: Complemental strand, 18326301 - 18326161
Alignment:
Q  229 tcataatttgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttc 328  Q
    |||||||||||| | | ||||||||||||||| ||||||||||||||||||| ||||  ||||||| ||||||||| ||||| | || |||||| || |     
T  18326301 tcataatttgaagatttatcttaagtaattgactccaagactcttcaactccgtaatgtgtcatttgccatataactaaatgagctttcttgacaacatg 18326202  T
Q  329 agaaaaacaaaggcaatccatcaacacaaatagtgatggct 369  Q
    |||||||||||||||||||| |||| || |||| |||||||    
T  18326201 agaaaaacaaaggcaatccagcaactcacatagagatggct 18326161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 253 - 354
Target Start/End: Original strand, 16846478 - 16846579
Alignment:
Q  253 gtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaaaaacaaaggcaatccatcaa 352  Q
    ||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||| |||| |||||| || | ||||||||||||||| ||||||||    
T  16846478 gtaattgagtccaagactcttgaactccataatctgtcatcttccatataacaagatgagtttgcttgacaacatgagaaaaacaaaggcagtccatcaa 16846577  T
Q  353 ca 354  Q
    ||    
T  16846578 ca 16846579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 253 - 354
Target Start/End: Original strand, 16839395 - 16839496
Alignment:
Q  253 gtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaaaaacaaaggcaatccatcaa 352  Q
    ||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||| |||| ||| || || | ||||||||||||||| ||||||||    
T  16839395 gtaattgagtccaagactcttgaactccataatctgtcatcttccatataacaagatgagttttcttaacaacatgagaaaaacaaaggcagtccatcaa 16839494  T
Q  353 ca 354  Q
    ||    
T  16839495 ca 16839496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 352
Target Start/End: Complemental strand, 26256841 - 26256732
Alignment:
Q  243 ctaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaaaaacaaaggc 342  Q
    |||||||||| |||||||||||||||||||| ||||||||| ||| |||| | ||||| ||||||||   ||||||||    | | ||||||||||||||    
T  26256841 ctaatcttaaataattgagtccaagactcttgaactccatactccttcatctgccataaaacaaaatcattttccttggtatcatgagaaaaacaaaggc 26256742  T
Q  343 aatccatcaa 352  Q
    | ||||||||    
T  26256741 attccatcaa 26256732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 356
Target Start/End: Original strand, 1985957 - 1986072
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaaaaacaaag 340  Q
    ||||||| ||||  |||||||||||||| |||||||| ||| | ||| |||||| ||| | |||||||||||||| |||||   | | ||||||| | ||    
T  1985957 aactaattttaaacaattgagtccaagattcttcaacgccaaattccttcatttgccaaagaacaaaatgggttttcttgaaatcataagaaaaatagag 1986056  T
Q  341 gcaatccatcaacaca 356  Q
    ||||||||||||||||    
T  1986057 gcaatccatcaacaca 1986072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 356
Target Start/End: Original strand, 15571897 - 15572012
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaaaaacaaag 340  Q
    ||||||| ||| | ||||||  ||||||||||||||||||| | ||| |||||| ||| || |||||||||||| ||||||   | | ||||||||||||    
T  15571897 aactaattttatggaattgaacccaagactcttcaactccaaactccctcatttgccacatgacaaaatgggttcccttgaaatcataagaaaaacaaag 15571996  T
Q  341 gcaatccatcaacaca 356  Q
     |||||||| ||||||    
T  15571997 acaatccataaacaca 15572012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 352
Target Start/End: Original strand, 19344573 - 19344688
Alignment:
Q  237 tgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaaaaac 336  Q
    ||||||||||| ||||| |||||||||||||| | |||||||||| | ||| |||| | ||||||||||||||| || | |||||     | ||||||||    
T  19344573 tgaaaactaattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatataacaaaatgagtgttcttgagattgtgagaaaaac 19344672  T
Q  337 aaaggcaatccatcaa 352  Q
    ||||||| ||||||||    
T  19344673 aaaggcagtccatcaa 19344688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 15444032 - 15443966
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaa 307  Q
    |||| ||||||| |||||||||||||||||||||||||||||| ||| |||| | ||||| ||||||    
T  15444032 aactcatcttaaataattgagtccaagactcttcaactccatactccttcatatgccataaaacaaa 15443966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 22019656 - 22019562
Alignment:
Q  19 gaacttactttcaatgacacaaaacttggctttcaacataattcttcgcatagagcctatcacgttggccattagtaattgtaattcgctctaca 113  Q
    |||||||||||| |||||||||||||  ||||||||||||||||||   |||||||||||  | || ||| || |||||| |||||| |||||||    
T  22019656 gaacttactttctatgacacaaaactaagctttcaacataattcttgatatagagcctatagcattagccgttggtaattctaattctctctaca 22019562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 24002267 - 24002201
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaa 307  Q
    ||||||||||||||||||||||||||||||||| |||||| || ||| |||| | ||||| ||||||    
T  24002267 aactaatcttaagtaattgagtccaagactcttgaactccgtactccttcatatgccataaaacaaa 24002201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 14076746 - 14076677
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatg 310  Q
    ||||||| ||||| |||||||||||||| |||||||||||| | ||| |||||| ||||||||| |||||    
T  14076746 aactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14076677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 14386774 - 14386705
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatg 310  Q
    ||||||| ||||| |||||||||||||| |||||||||||| | ||| |||||| ||||||||| |||||    
T  14386774 aactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14386705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 22011153 - 22011108
Alignment:
Q  19 gaacttactttcaatgacacaaaacttggctttcaacataattctt 64  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||    
T  22011153 gaacttactttcaatgacacaaaactaagctttcaacataattctt 22011108  T

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Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 660849 - 660916
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaa 308  Q
    ||||||| ||||| ||||||||||||||||||||||||| | | ||| |||| | |||||||||||||    
T  660849 aactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaaa 660916  T

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Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 26218035 - 26217968
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaa 308  Q
    |||||||||||| |||||||| ||||||||||| ||||||||| ||| |||| | ||||| |||||||    
T  26218035 aactaatcttaaataattgagaccaagactcttgaactccatactccttcatctgccataaaacaaaa 26217968  T

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Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 24010451 - 24010385
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaa 307  Q
    ||||||||||||||||||||||||||||||||| ||| || || ||| |||| | ||||| ||||||    
T  24010451 aactaatcttaagtaattgagtccaagactcttgaaccccgtactccttcatatgccataaaacaaa 24010385  T

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Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 19351067 - 19351143
Alignment:
Q  237 tgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggt 313  Q
    ||||||||||| || || ||| ||||||||||||| ||||||||| | ||| |||| | ||||| ||||||||||||    
T  19351067 tgaaaactaattttgaggaatggagtccaagactcctcaactccaaattccatcatctgccataaaacaaaatgggt 19351143  T

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Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 19357982 - 19357906
Alignment:
Q  237 tgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggt 313  Q
    ||||||||||| || |  ||||||||||||||||||| ||||||| | ||| |||| ||||||| ||| ||||||||    
T  19357982 tgaaaactaatttttaagaattgagtccaagactcttgaactccaaattccatcatcttccataaaacgaaatgggt 19357906  T

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Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 320
Target Start/End: Complemental strand, 19779674 - 19779591
Alignment:
Q  237 tgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttg 320  Q
    ||||||||||| || || |||||||||||||| |||| |||||| || ||| ||||   ||||| |||||||||||| ||||||    
T  19779674 tgaaaactaattttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctccttg 19779591  T

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Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 19887709 - 19887792
Alignment:
Q  237 tgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttg 320  Q
    ||||||||||| || || |||||||||||||| |||| |||||| || ||| ||||   ||||| |||||||||||| ||||||    
T  19887709 tgaaaactaattttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctccttg 19887792  T

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Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 24035819 - 24035760
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccata 300  Q
    |||||||||||| |||||||||||||||||||| ||| || || ||| |||||| |||||    
T  24035819 aactaatcttaaataattgagtccaagactcttgaacgccgtactccttcatttgccata 24035760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 26230285 - 26230218
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaa 308  Q
    |||||||||||| |||||||| ||||||||||| ||||||||| ||  |||| | ||||| |||||||    
T  26230285 aactaatcttaaataattgagaccaagactcttgaactccatactctttcatctgccataaaacaaaa 26230218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 13888104 - 13888170
Alignment:
Q  249 ttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggttt 315  Q
    ||||| |||||||||||||||| |||  ||||| | |  |||||||||||||||||||||| |||||    
T  13888104 ttaaggaattgagtccaagacttttcgtctccaaattttgtcattttccatataacaaaattggttt 13888170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 20338976 - 20338918
Alignment:
Q  257 ttgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggttt 315  Q
    |||||||||||| |||||||||||  | ||| ||||||||||||| |||||||| ||||    
T  20338976 ttgagtccaagaatcttcaactcctaattccttcattttccatattacaaaatgagttt 20338918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 22063710 - 22063636
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggttt 315  Q
    ||||||| || | ||| |||||||||||||||| || |||| | ||| |||||| ||||||||||||||| ||||    
T  22063710 aactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatgagttt 22063636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 23993603 - 23993537
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaa 307  Q
    |||||||||||| |||||||||||||||||||| ||| || || ||| |||| | ||||| ||||||    
T  23993603 aactaatcttaaataattgagtccaagactcttgaaccccgtactccttcatatgccataaaacaaa 23993537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 321
Target Start/End: Original strand, 18514789 - 18514869
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgt-cattttccatataacaaaatgggtttccttga 321  Q
    ||||||| ||||| |||||||||||||| | |||||||||| ||| ||| ||||||||||||||  |||||| ||| |||||    
T  18514789 aactaattttaaggaattgagtccaagagttttcaactcca-aattcgtccattttccatataatgaaatggcttttcttga 18514869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 20058059 - 20058128
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatg 310  Q
    ||||||| ||||| ||||||  |||||||||||||||||   | |||  |||||||||||||||||||||    
T  20058059 aactaattttaagaaattgacaccaagactcttcaactctgaattcctccattttccatataacaaaatg 20058128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 22021685 - 22021640
Alignment:
Q  19 gaacttactttcaatgacacaaaacttggctttcaacataattctt 64  Q
    |||||||||||||||||||||||||   |||||||||||| |||||    
T  22021685 gaacttactttcaatgacacaaaaccaagctttcaacatatttctt 22021640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 320
Target Start/End: Original strand, 29454100 - 29454184
Alignment:
Q  236 ttgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttg 320  Q
    |||| ||||||| ||||  |||||||||||||| |||||||||||| | | | ||||   |||||||||||||| || |||||||    
T  29454100 ttgataactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaatcgggttccttg 29454184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 36263105 - 36263053
Alignment:
Q  257 ttgagtccaagactcttcaactccataatccgtcattttccatataacaaaat 309  Q
    ||||||||||||||||||||||||| | ||   ||| ||||||||||||||||    
T  36263105 ttgagtccaagactcttcaactccaaattcttccatcttccatataacaaaat 36263053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 352
Target Start/End: Original strand, 10205439 - 10205557
Alignment:
Q  234 atttgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaaa 333  Q
    ||||||| | ||||||||| || ||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| |||| ||| || || | | |||    
T  10205439 atttgaagattaatcttaactagttgagtccaagactcttcaacaccatactcagtcatcttccatataacaaaatgagttttcttaacaacattaaaaa 10205538  T
Q  334 aacaaaggcaatccatcaa 352  Q
    |||||||| ||||||||||    
T  10205539 aacaaaggaaatccatcaa 10205557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 18908805 - 18908886
Alignment:
Q  235 tttgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttc 316  Q
    ||||||||||||| || || ||||||||||||||||||| ||||||| | ||| |||| |||||||||||||||||||||||    
T  18908805 tttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtttc 18908886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 356
Target Start/End: Original strand, 18913553 - 18913674
Alignment:
Q  235 tttgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaaaa 334  Q
    ||||||||||||| || || ||||||||||||||||||| ||||||| | ||| |||| ||||||||||||||||||||| || |||     | ||||||    
T  18913553 tttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttcccctgaaacggtgagaaaa 18913652  T
Q  335 acaaaggcaatccatcaacaca 356  Q
    ||| || |||||||||||||||    
T  18913653 acatagacaatccatcaacaca 18913674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 18920761 - 18920842
Alignment:
Q  235 tttgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttc 316  Q
    ||||||||||||| || || ||||||||||||||||||| ||||||| | ||| |||| |||||||||||||||||||||||    
T  18920761 tttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtttc 18920842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 314
Target Start/End: Complemental strand, 554544 - 554471
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtt 314  Q
    ||||||| ||||||||||||||||||||||||| ||||||||| ||  |||||| |||||||| || |||||||    
T  554544 aactaattttaagtaattgagtccaagactctttaactccatattctatcatttgccatataataagatgggtt 554471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 318
Target Start/End: Complemental strand, 25377142 - 25377065
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttcct 318  Q
    ||||||| |||| ||||||| |||||||||||| ||||||| ||||| ||||  ||||||||||||||||| ||||||    
T  25377142 aactaattttaaataattgaatccaagactcttgaactccaaaatccttcatcatccatataacaaaatggttttcct 25377065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 241 - 321
Target Start/End: Complemental strand, 14514968 - 14514888
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttga 321  Q
    ||||||| ||||| |||||||||||||| |||||||||||| | ||   ||||||||||||||||| |||||||| |||||    
T  14514968 aactaattttaaggaattgagtccaagaatcttcaactccaaattcatccattttccatataacaagatgggttttcttga 14514888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 20980653 - 20980604
Alignment:
Q  260 agtccaagactcttcaactccataatccgtcattttccatataacaaaat 309  Q
    |||||||||||||||||||| | | || ||||||||||||||||||||||    
T  20980653 agtccaagactcttcaactctaaattctgtcattttccatataacaaaat 20980604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 20975612 - 20975557
Alignment:
Q  255 aattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatg 310  Q
    |||||| ||||||| |||||||||||| | ||| |||||| |||||||||||||||    
T  20975612 aattgaatccaagaatcttcaactccaaattccctcatttgccatataacaaaatg 20975557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 241 - 353
Target Start/End: Complemental strand, 53774908 - 53774796
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaaaaacaaag 340  Q
    ||||||| ||||| ||||||||||||||||||||||||||| | ||| |||||| ||||||||||||||| ||||| || |   | | |||||||||||     
T  53774908 aactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtttctttaaaatcataagaaaaacaaat 53774809  T
Q  341 gcaatccatcaac 353  Q
     ||||||||||||    
T  53774808 acaatccatcaac 53774796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 320
Target Start/End: Complemental strand, 3557794 - 3557715
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttg 320  Q
    ||||||| ||||| ||||||||||||||||||||||| ||| | ||| |||| | |||||||| ||||| ||||||||||    
T  3557794 aactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataataaaatcggtttccttg 3557715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 11970984 - 11971058
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggttt 315  Q
    |||||||  |||| |||||||||||||||||||| |||||| | ||| |||||| ||||||||||||||| ||||    
T  11970984 aactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaatgagttt 11971058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 318
Target Start/End: Complemental strand, 6372513 - 6372436
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttcct 318  Q
    ||||||| |||  ||||||| || ||||||||| ||||||| ||||| |||||| |||||||| ||||||||||||||    
T  6372513 aactaattttatataattgaatctaagactcttgaactccagaatccttcatttgccatataataaaatgggtttcct 6372436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 837842 - 837770
Alignment:
Q  243 ctaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggttt 315  Q
    ||||| |||| ||||||| |||||||||||| ||| ||| ||| | |||||| ||||||||||||||||||||    
T  837842 ctaattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccatataacaaaatgggttt 837770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 321
Target Start/End: Original strand, 10553548 - 10553628
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttga 321  Q
    ||||||| ||||| || ||| |||||||||||| ||||||| |||| ||||||||||||| ||||| |||| || ||||||    
T  10553548 aactaatgttaagcaactgaatccaagactcttgaactccaaaatctgtcattttccataaaacaagatggcttcccttga 10553628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 3565812 - 3565738
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggttt 315  Q
    ||||||| ||||| ||||||||||||||||||||||| ||| | ||| |||| | |||||||| ||||| |||||    
T  3565812 aactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttt 3565738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 11981685 - 11981759
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggttt 315  Q
    ||||||| ||||| ||| ||||||| |||||||| |||||| | ||| |||||| ||||||||||||||| ||||    
T  11981685 aactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatataacaaaatgagttt 11981759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 318
Target Start/End: Complemental strand, 6392892 - 6392812
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataa---caaaatgggtttcct 318  Q
    ||||||| |||| ||||||| |||||||||| | ||||||| ||||| |||||| |||||| |   |||||||||||||||    
T  6392892 aactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatttgccatatgatgacaaaatgggtttcct 6392812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 10571278 - 10571343
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaa 306  Q
    ||||||| ||||  || ||| |||||||||||| ||||||| |||| ||||||||||||| |||||    
T  10571278 aactaattttaaacaactgaatccaagactcttgaactccaaaatctgtcattttccataaaacaa 10571343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 53790625 - 53790552
Alignment:
Q  237 tgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatg 310  Q
    ||||||||||| ||||| |||||||||||||| | ||||| |||| | |  ||||| |||||||||| ||||||    
T  53790625 tgaaaactaattttaagaaattgagtccaagattgttcaaatccaaattttgtcatcttccatataataaaatg 53790552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 3560960 - 3560996
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaac 277  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  3560960 aactaattttaagaaattgagtccaagactcttcaac 3560996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 241 - 356
Target Start/End: Original strand, 6947882 - 6947997
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaaaaacaaag 340  Q
    ||||||| ||||| |||||||||||||| |||||||||||| | ||| |||||| ||| | |||||| ||||||| |||||   | |  |||||||||||    
T  6947882 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccaaagaacaaagtgggttttcttgaaatcatgtgaaaaacaaag 6947981  T
Q  341 gcaatccatcaacaca 356  Q
    ||||||||||||||||    
T  6947982 gcaatccatcaacaca 6947997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 6921352 - 6921426
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggttt 315  Q
    ||||||| ||||| |||||||||||||| |||||||||||| | ||| |||||| ||| ||||||||||||||||    
T  6921352 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 6921426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 238 - 352
Target Start/End: Original strand, 6954518 - 6954632
Alignment:
Q  238 gaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaaaaaca 337  Q
    |||||||||| ||||  |||||||||||||| |||||||||||| | ||| |||||| ||| ||||||||||||||||  ||||   | | ||| |||||    
T  6954518 gaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaaca 6954617  T
Q  338 aaggcaatccatcaa 352  Q
     ||||||||||||||    
T  6954618 gaggcaatccatcaa 6954632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 241 - 356
Target Start/End: Complemental strand, 20770718 - 20770603
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaaaaacaaag 340  Q
    ||||||| ||||| |||||| |||| |||||||||| |||| | ||| |||||| ||||||||||||||  ||||  || ||  | | |||||||||||     
T  20770718 aactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaataagtttttttaacatcatgagaaaaacaaat 20770619  T
Q  341 gcaatccatcaacaca 356  Q
     |||||||||||||||    
T  20770618 acaatccatcaacaca 20770603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 352
Target Start/End: Original strand, 6935220 - 6935331
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaaaaacaaag 340  Q
    ||||||| ||||| |||| ||||||||| |||| ||||||| | ||| |||||| ||| |||||| ||||||||| ||| |   | | ||||||| | ||    
T  6935220 aactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacataatgggttttcttaaaatcataagaaaaatagag 6935319  T
Q  341 gcaatccatcaa 352  Q
    ||||||||||||    
T  6935320 gcaatccatcaa 6935331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 14749451 - 14749393
Alignment:
Q  255 aattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggt 313  Q
    ||||||||||||||||||| ||||||| | ||| ||||  |||||| ||||||||||||    
T  14749451 aattgagtccaagactcttgaactccaaattccatcatcctccataaaacaaaatgggt 14749393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 17369732 - 17369679
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattt 294  Q
    ||||||| ||||| |||||||||||||| |||||||||||| | ||| ||||||    
T  17369732 aactaattttaagaaattgagtccaagagtcttcaactccaaattccttcattt 17369679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 24950154 - 24950214
Alignment:
Q  249 ttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaat 309  Q
    ||||| |||||| |||||||||| ||||||||| | | | |||| ||||||||||||||||    
T  24950154 ttaaggaattgactccaagactcctcaactccaaacttcatcatcttccatataacaaaat 24950214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 321
Target Start/End: Original strand, 29597548 - 29597634
Alignment:
Q  235 tttgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttga 321  Q
    ||||||||||||| ||||| |||||||||||||| | |||||||||| | ||  |||||| ||||||||||||||| ||||||||||    
T  29597548 tttgaaaactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagtttccttga 29597634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 352
Target Start/End: Complemental strand, 29647750 - 29647633
Alignment:
Q  235 tttgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaaaa 334  Q
    ||||||||||||| ||||| |||||||||||||| | ||||| |||| | ||  |||||| ||||||||||||||| |||| ||| |     | ||||||    
T  29647750 tttgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacaaaatgagttttcttaagatggtgagaaaa 29647651  T
Q  335 acaaaggcaatccatcaa 352  Q
    ||||||||||||||||||    
T  29647650 acaaaggcaatccatcaa 29647633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 28763928 - 28763980
Alignment:
Q  262 tccaagactcttcaactccataatccgtcattttccatataacaaaatgggtt 314  Q
    ||||||||| |||||||||| | | |||||| |||||||||||||||||||||    
T  28763928 tccaagacttttcaactccaaattgcgtcatcttccatataacaaaatgggtt 28763980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 24330917 - 24330980
Alignment:
Q  257 ttgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttg 320  Q
    |||||||||||| |||||||| ||| | ||| |||| | |||||||||||||| ||||||||||    
T  24330917 ttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggtttccttg 24330980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 303
Target Start/End: Original strand, 18964840 - 18964894
Alignment:
Q  249 ttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataa 303  Q
    ||||| |||||||||||||| |||||||||||| | ||| |||||| ||||||||    
T  18964840 ttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 18964894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 29642431 - 29642353
Alignment:
Q  237 tgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggttt 315  Q
    ||||||||||| ||||| |||||||||||||| | ||||| |||| | ||  |||||| ||||||||| ||||| ||||    
T  29642431 tgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttt 29642353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 445
Target Start/End: Original strand, 3234005 - 3234141
Alignment:
Q  309 tgggtttccttgaccacttcagaaaaacaaaggcaatccatcaacacaaatagtgatggctcgacatatggcttttgatcaaatcctcgaggggggaaaa 408  Q
    ||||||| |||||| || |  ||||| || |||||||||||||| ||| |||| |||||||| | | |||||  ||||||||| ||| ||||  | |  |    
T  3234005 tgggttttcttgacaacgtgggaaaagcagaggcaatccatcaaaacacatagagatggctcaaaacatggcacttgatcaaaaccttgaggaagaagca 3234104  T
Q  409 actctttgtatgtctctgtacccagatcaagtaaaat 445  Q
    ||||||||||||||| | ||| ||||| |||| ||||    
T  3234105 actctttgtatgtctgtttactcagataaagtgaaat 3234141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 237 - 356
Target Start/End: Original strand, 32578863 - 32578982
Alignment:
Q  237 tgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaaaaac 336  Q
    |||||||||||||| || ||||||||||||||||| | |||||| || ||| ||||  |||||| |||||||||||| |||||||     | ||||||||    
T  32578863 tgaaaactaatcttgaggaattgagtccaagactcgtgaactccgtactccatcatcatccataaaacaaaatgggtctccttgaaacggtgagaaaaac 32578962  T
Q  337 aaaggcaatccatcaacaca 356  Q
    | || |||||||||||||||    
T  32578963 atagacaatccatcaacaca 32578982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 255 - 321
Target Start/End: Original strand, 25901295 - 25901361
Alignment:
Q  255 aattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttga 321  Q
    |||||| |||||||||||| ||||| | ||||| ||||||||||||||||||||||| || ||||||    
T  25901295 aattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttga 25901361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 255 - 321
Target Start/End: Original strand, 25915313 - 25915379
Alignment:
Q  255 aattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttga 321  Q
    |||||| |||||||||||| ||||| | ||||| ||||||||||||||||||||||| || ||||||    
T  25915313 aattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttga 25915379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 235 - 320
Target Start/End: Complemental strand, 3625808 - 3625723
Alignment:
Q  235 tttgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttg 320  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||| ||| | | | |||||| |||||||| || || |||| |||||    
T  3625808 tttgataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataataagataggttaccttg 3625723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 50645487 - 50645556
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatg 310  Q
    ||||||| |||| ||||||| |||||||||||| ||||||| ||||| |||||| ||| |||||||||||    
T  50645487 aactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttgccacataacaaaatg 50645556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 4570995 - 4570927
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaat 309  Q
    ||||||| ||||| |||||||||||||| |||||||| ||| | | | |||||| ||||||||||||||    
T  4570995 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 4570927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 320
Target Start/End: Complemental strand, 10219053 - 10218974
Alignment:
Q  241 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttg 320  Q
    ||||||| |||||||||||||||||||| |||||||  ||| | | | |||||| ||||| ||||||||  |||||||||    
T  10219053 aactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaaatcagtttccttg 10218974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 21855401 - 21855464
Alignment:
Q  257 ttgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttg 320  Q
    |||||||||||| |||||||| ||| | ||| |||| | |||||||||||||| ||||||||||    
T  21855401 ttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggtttccttg 21855464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 39379071 - 39379131
Alignment:
Q  249 ttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaat 309  Q
    ||||| ||||||||||||||||||||||| ||| | ||| |||| | |||||||| |||||    
T  39379071 ttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaat 39379131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 24265 - 24206
Alignment:
Q  249 ttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaa 308  Q
    ||||| |||||||| ||||||| |||| ||||||| || ||||| |||||||||||||||    
T  24265 ttaaggaattgagttcaagacttttcatctccatattctgtcatcttccatataacaaaa 24206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 8133 - 8049
Alignment:
Q  237 tgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttga 321  Q
    ||||||||||| || || |||||| ||||||| |||| ||||||  | ||| ||||  |||||| ||||||||||||| ||||||    
T  8133 tgaaaactaattttgagaaattgaatccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttga 8049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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