View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4589_low_9 (Length: 275)
Name: NF4589_low_9
Description: NF4589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4589_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 41404479 - 41404234
Alignment:
| Q |
20 |
tatctgaccagagacagttcacgtaaacatatatcacaatcacaaccttaaatcttcacgaacatcacattggacctttggcatgcacatatttcatatg |
119 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41404479 |
tatctgaccagagacggttcacgtaaacatataccacaatcacaaccttaaatcttcacgaacatcacattggacctttggcatgcacatatttcatatg |
41404380 |
T |
|
| Q |
120 |
gtttctgttcaatcgacttagaaggaagtcaaggaacacaattgcttgcgagtagagcacatgccaaaaatgactctaattgactcgtaatctatcaaac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41404379 |
gtttctgttcaatcgacttagaaggaagtcaaggaacacaattgcttgcgagtagagcacatgccaaaaatgactctaattgactcgtaatctatcaaac |
41404280 |
T |
|
| Q |
220 |
atgtcttatagggtctgattcctactttcatacacatcatttcatt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41404279 |
atgtcttatagggtctgattcctactttcatacacatcatttcatt |
41404234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University