View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4590-Insertion-2 (Length: 955)
Name: NF4590-Insertion-2
Description: NF4590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4590-Insertion-2 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 387 - 955
Target Start/End: Complemental strand, 26550518 - 26549959
Alignment:
| Q |
387 |
agatatggtttgaaaaagtgtttataggtggggagacgtccctcattgtatagatcgattttgtaggttatactgacttggtgtctcatttgtgatatta |
486 |
Q |
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| T |
26550518 |
agatatggtttgaaaaagtgtttataggtggggagacatccctcatcgtatagatcgattttgtaggttatactgacttggtgtctcatttgtgatattt |
26550419 |
T |
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| Q |
487 |
ttctgcttaggttctgattgcagctggagtttcaatggcaatcgggcaactttctaagccatttacttctgtgtttctgtatggcaaagagtttgatatc |
586 |
Q |
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| T |
26550418 |
ttctgcttaggttctgattgcagctggagtttcaatggcaatcgggcaactttctaagccatttacttctgtgtttctgtatggcaaagagtttgatatc |
26550319 |
T |
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| Q |
587 |
aaggctcttattcaagctggagggttcccatcatcacactcttctgtatgaacttgaaacccttaaccagtaaatcctactttcatttcatctattccac |
686 |
Q |
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| T |
26550318 |
aaggctcttattcaagctggagggtttccatcatcacactcttctgtatgaacttgaaacccttaaccagtaaatcctactttcatttcatctattccac |
26550219 |
T |
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| Q |
687 |
ttgactagtgttgtttcacttttattctcacatagttgtttaaattttcttttggataggcaacagtggcttgtgcaacattacttgggccttgagaggt |
786 |
Q |
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| T |
26550218 |
ttgactagtgttgtttcacttttattctcacatagttgtttaaattttcttttggataggcaacagtggcttgtgcaacattactt-ggccttgagaggt |
26550120 |
T |
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| Q |
787 |
aagataatttcagttatgctgactttggtgtctagttcatggcatttttctcttcactcttctgaaaattgcaattttccttaagaataatgtttctgta |
886 |
Q |
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| T |
26550119 |
aagataa-ttcagttatgctgac-ttggtgtctagttcatggcatttttctcttcactcttctgaaaattgcaatttt-cttaagaataatgtttctgta |
26550023 |
T |
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| Q |
887 |
ttttattttttaatttgttattatccaaatgcagaaggccttctcagatcccatttttgggtcttgcag |
955 |
Q |
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| T |
26550022 |
ttt--atttttaattgtttattatccaaatgcag-aggcc-tctcagatcccattttt-ggtcttgcag |
26549959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 205 - 386
Target Start/End: Complemental strand, 26550734 - 26550558
Alignment:
| Q |
205 |
caaataattattggtttctcatgttatgttatgttatgtgtatgtgtccgtgcttcataggatatgacctaaacatgttctcaaaatcgtgttttaagac |
304 |
Q |
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| T |
26550734 |
caaataattattggtttctcatgttatgttatgt-----gtatgtgtccgtgcttcataggatatggcctaaacatgttctcaaaaacgtgttttaagat |
26550640 |
T |
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| Q |
305 |
ggtattagagtttatcaaatattcgttaggctacttttacacactatcgtgtgtcactcatgttacatgccagatgcttagt |
386 |
Q |
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| T |
26550639 |
ggtattagagtttatcaaatattcgttagcctacttttacacactatcgtgtgtcactcatgttacatgccagatgtttagt |
26550558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 26550887 - 26550744
Alignment:
| Q |
8 |
atttgtgtatcacttgtttttatgtctctgcaaattctgggttttgctcaaaattctgtttttt-attggttttttaagctatctattgagagttccaat |
106 |
Q |
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| T |
26550887 |
atttgtgtatcacttgtttttatgtctctgcaaattctgggttttgctcaaaattctgtttttttattggttttttaagctatctattgagagttccaat |
26550788 |
T |
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| Q |
107 |
tatatgagcacaacgcaccgacacttttgatcaaaggcgtggcc |
150 |
Q |
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| T |
26550787 |
tagatgagcacaacacaccgacacttttgatcaaaggcgtggcc |
26550744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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