View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4590_high_10 (Length: 240)

Name: NF4590_high_10
Description: NF4590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4590_high_10
NF4590_high_10
[»] chr7 (2 HSPs)
chr7 (120-223)||(30112293-30112396)
chr7 (4-76)||(35811016-35811085)
[»] chr6 (1 HSPs)
chr6 (141-221)||(11927896-11927976)
[»] chr2 (1 HSPs)
chr2 (138-221)||(15030287-15030371)
[»] chr1 (1 HSPs)
chr1 (136-221)||(35241027-35241113)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 30112396 - 30112293
Alignment:
Q  120 ctacttttagatcagtttaccaattccaaattgaaactatgtcaagtaaaatcagttaacctttgttttaaatcagggagtacacatcatcatttgaagt 219  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30112396 ctacttttagatcattttaccaattccaaattgaaactatgtcaagtaaaatcagttaacctttgttttaaatcagggagtacacatcatcatttgaagt 30112297  T
Q  220 tagt 223  Q
    ||||    
T  30112296 tagt 30112293  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 35811016 - 35811085
Alignment:
Q  4 attcggcctgttggcttcgagactattctgattttgatctgactcctttataaatgcgatgtttgcagctctg 76  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||   ||| ||||| ||||||||||||||    
T  35811016 attcggcctgttgcctttgagactattctgattttgatctgactcc---atatatgcgttgtttgcagctctg 35811085  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 11927976 - 11927896
Alignment:
Q  141 aattccaaattgaaactatgtcaagtaaaatcagttaacctttgttttaaatcagggagtacacatcatcatttgaagtta 221  Q
    |||||||| ||||||| ||||||||||   | |||| ||||||||||||||||||||||| |||||||| |||||||||||    
T  11927976 aattccaatttgaaaccatgtcaagtatggttagttgacctttgttttaaatcagggagtgcacatcattatttgaagtta 11927896  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 15030371 - 15030287
Alignment:
Q  138 accaattccaaattgaaactatgtcaagtaaaatcagttaacctttgtttt-aaatcagggagtacacatcatcatttgaagtta 221  Q
    ||||||||||| |||||||||||||||||| | | | ||||| |||||||| |||||||||||| |||||||| |||||||||||    
T  15030371 accaattccaatttgaaactatgtcaagtatagtgaattaacatttgtttttaaatcagggagtgcacatcattatttgaagtta 15030287  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 35241113 - 35241027
Alignment:
Q  136 ttaccaattccaaattgaaactatgtcaagtaaaatcagttaacctttgtttt-aaatcagggagtacacatcatcatttgaagtta 221  Q
    ||||||||||||| ||||||  |||| ||||| | | | ||||||||| |||| |||||| |||| ||||||||| |||||||||||    
T  35241113 ttaccaattccaatttgaaatcatgtaaagtatagttacttaacctttttttttaaatcaaggagaacacatcattatttgaagtta 35241027  T

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