View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4590_high_11 (Length: 240)
Name: NF4590_high_11
Description: NF4590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4590_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1442540 - 1442762
Alignment:
| Q |
1 |
tgtaaccagttttatatggtagtttctccaaaggtggcaatatcttgaatttcctaatataagggttccatgctacgagattttgatgttccttattaca |
100 |
Q |
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| T |
1442540 |
tgtaaccagttttatatggtagtttctccaaaggtggcaatatcttgaatttcctaatataagggttccatgctacgagattttgatgttccttattgca |
1442639 |
T |
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| Q |
101 |
gtcaaatgtgtcgaaaaagatgatgccatcgcaagagtcaatgatgagaacatgaaggttagaagagtttagagggaatttgagtattttctccgggatg |
200 |
Q |
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| T |
1442640 |
gtcaaatgtgtcgaaaaagatgatgccatcgcaagagtcaatgatgagaacatgaaggttagaagagtttagaggaaatttgagtattgtctccgggatg |
1442739 |
T |
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| Q |
201 |
atggtgttgttaattcttgagtt |
223 |
Q |
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| T |
1442740 |
atggtgttgttaattcttgagtt |
1442762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 142
Target Start/End: Original strand, 7565304 - 7565333
Alignment:
| Q |
113 |
gaaaaagatgatgccatcgcaagagtcaat |
142 |
Q |
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| T |
7565304 |
gaaaaagatgatgccatcgcaagagtcaat |
7565333 |
T |
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