View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4590_high_12 (Length: 237)

Name: NF4590_high_12
Description: NF4590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4590_high_12
NF4590_high_12
[»] chr4 (7 HSPs)
chr4 (11-223)||(51555642-51555854)
chr4 (74-156)||(35743322-35743404)
chr4 (93-147)||(6360677-6360731)
chr4 (117-155)||(35726742-35726780)
chr4 (74-127)||(25487492-25487545)
chr4 (74-126)||(25896867-25896919)
chr4 (92-132)||(29778880-29778920)
[»] chr3 (9 HSPs)
chr3 (74-124)||(30657371-30657421)
chr3 (74-156)||(12923276-12923355)
chr3 (74-127)||(10540428-10540481)
chr3 (120-156)||(27290895-27290931)
chr3 (81-156)||(45590704-45590779)
chr3 (122-156)||(13804817-13804851)
chr3 (120-156)||(5391919-5391955)
chr3 (120-152)||(20192600-20192632)
chr3 (120-156)||(53762388-53762424)
[»] chr8 (6 HSPs)
chr8 (78-127)||(13652298-13652347)
chr8 (78-127)||(13710941-13710990)
chr8 (74-147)||(1664431-1664504)
chr8 (74-147)||(1892159-1892232)
chr8 (120-156)||(12361232-12361268)
chr8 (74-139)||(6864408-6864473)
[»] scaffold0199 (1 HSPs)
scaffold0199 (74-147)||(6872-6945)
[»] chr6 (6 HSPs)
chr6 (74-115)||(7351606-7351647)
chr6 (122-156)||(9667981-9668015)
chr6 (74-128)||(31774458-31774512)
chr6 (74-127)||(2455892-2455945)
chr6 (120-156)||(3738109-3738145)
chr6 (120-156)||(31624130-31624166)
[»] chr1 (6 HSPs)
chr1 (74-127)||(32515376-32515429)
chr1 (81-123)||(15581340-15581382)
chr1 (123-156)||(11695901-11695934)
chr1 (74-114)||(6292587-6292627)
chr1 (120-156)||(29723529-29723565)
chr1 (120-156)||(35925730-35925766)
[»] chr2 (6 HSPs)
chr2 (92-132)||(40667484-40667524)
chr2 (122-156)||(1939328-1939362)
chr2 (122-156)||(10285900-10285934)
chr2 (122-156)||(34652032-34652066)
chr2 (120-156)||(1647276-1647312)
chr2 (80-156)||(13869049-13869125)
[»] scaffold0003 (1 HSPs)
scaffold0003 (120-154)||(306368-306402)
[»] chr7 (3 HSPs)
chr7 (74-128)||(24048621-24048675)
chr7 (122-156)||(45078318-45078352)
chr7 (74-114)||(24363535-24363575)
[»] chr5 (3 HSPs)
chr5 (74-128)||(7907963-7908017)
chr5 (74-111)||(36542221-36542258)
chr5 (120-156)||(21768191-21768227)
[»] scaffold0004 (1 HSPs)
scaffold0004 (120-156)||(98634-98670)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 51555642 - 51555854
Alignment:
Q  11 caaaggtatcagtgatgccaaggttgacaagattattgaagcaggtattcattcactttcaattttgagtttatctactcacataagcacttatgagatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51555642 caaaggtatcagtgatgccaaggttgacaagattattgaagcaggtattcattcactttcaattttgagtttatctactcacataagcacttatgagatt 51555741  T
Q  111 gtttagaagagcttatgacatgcccataagctgttttcaacttattagggtccttacatgaaaacaacataagctcttttcagggtcctttatttttagg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51555742 gtttagaagagcttatgacatgcccataagctgttttcaacttattagggtccttacatgaaaacaacataaactcttttcagggtcctttatttttagg 51555841  T
Q  211 gtctgtttggatt 223  Q
    |||||||||||||    
T  51555842 gtctgtttggatt 51555854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 35743404 - 35743322
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||| ||||||||| | ||||||| || ||||| |||||||||||||||||||||||   ||||| ||||| |||||||||    
T  35743404 tttgagattatctactaatataagcatttgtgagactgtttagaagagcttatgacatgtttataagttgtttccaacttatt 35743322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 6360677 - 6360731
Alignment:
Q  93 ataagcacttatgagattgtttagaagagcttatgacatgcccataagctgtttt 147  Q
    |||||||||||||||| | ||| | ||||||||||||||| ||||||| ||||||    
T  6360677 ataagcacttatgagactatttgggagagcttatgacatgtccataagttgtttt 6360731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 35726742 - 35726780
Alignment:
Q  117 aagagcttatgacatgcccataagctgttttcaacttat 155  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  35726742 aagagcttatgacatgtccataagctattttcaacttat 35726780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 25487492 - 25487545
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatg 127  Q
    |||||||||||||| |  ||||||||||| | ||||||||| ||||||||||||    
T  25487492 tttgagtttatctattagcataagcacttgtaagattgtttggaagagcttatg 25487545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 25896919 - 25896867
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttat 126  Q
    ||||||||||||||||  ||| ||||||| ||||| ||||||| |||||||||    
T  25896919 tttgagtttatctactagcattagcacttgtgagactgtttaggagagcttat 25896867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 29778920 - 29778880
Alignment:
Q  92 cataagcacttatgagattgtttagaagagcttatgacatg 132  Q
    ||||| ||||| ||||||||||||||| |||||||||||||    
T  29778920 cataaacacttgtgagattgtttagaaaagcttatgacatg 29778880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 30657421 - 30657371
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagctt 124  Q
    |||||||||||||||| |||||||||||| ||||||||||| |||||||||    
T  30657421 tttgagtttatctactgacataagcacttttgagattgtttggaagagctt 30657371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 12923276 - 12923355
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||||||||| ||||||||||    |||| ||||| | ||||||||||||||| ||||||| |||||||| ||||||    
T  12923276 tttgagtttatctactaacataagcacc---gagactgtttgggagagcttatgacatgtccataagttgttttcagcttatt 12923355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 10540428 - 10540481
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatg 127  Q
    |||||||||||||| |||||||||||||||| ||| | ||||| ||||||||||    
T  10540428 tttgagtttatctattcacataagcacttatcagactctttaggagagcttatg 10540481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 27290895 - 27290931
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||||||||||||||||||||||| ||||||    
T  27290895 agcttatgacatgcccataagctgttttcagcttatt 27290931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 45590779 - 45590704
Alignment:
Q  81 ttatctactcacataagcacttatgagattgtttagaagagcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||  ||||||||||| ||||| ||||| | ||||||||||| | | ||||||| | |||||||||||||    
T  45590779 ttatctactagcataagcacttgtgagactgtttgggagagcttatgataagtccataagttattttcaacttatt 45590704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 13804851 - 13804817
Alignment:
Q  122 cttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||| |||||||||||||||||||||||    
T  13804851 cttatgacatgtccataagctgttttcaacttatt 13804817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 5391955 - 5391919
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||||||  ||||||||||||||||||||||    
T  5391955 agcttatgacatgttcataagctgttttcaacttatt 5391919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 20192600 - 20192632
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaact 152  Q
    ||||||||||||| |||||||||||||||||||    
T  20192600 agcttatgacatgtccataagctgttttcaact 20192632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 53762388 - 53762424
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||||||  ||||||||||||||||||||||    
T  53762388 agcttatgacatgttcataagctgttttcaacttatt 53762424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 13652347 - 13652298
Alignment:
Q  78 agtttatctactcacataagcacttatgagattgtttagaagagcttatg 127  Q
    ||||||||||||||||||||||||| |||| |||||| ||||||||||||    
T  13652347 agtttatctactcacataagcacttgtgaggttgtttggaagagcttatg 13652298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 13710990 - 13710941
Alignment:
Q  78 agtttatctactcacataagcacttatgagattgtttagaagagcttatg 127  Q
    ||||||||||||||||||||||||| |||| |||||| ||||||||||||    
T  13710990 agtttatctactcacataagcacttgtgaggttgtttggaagagcttatg 13710941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 1664504 - 1664431
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatgacatgcccataagctgtttt 147  Q
    ||||||||||||||||  ||||| ||||| ||||| ||||| | ||||||||||||||| |||| || ||||||    
T  1664504 tttgagtttatctactagcataaacacttgtgagactgtttgggagagcttatgacatgtccattagttgtttt 1664431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 1892159 - 1892232
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatgacatgcccataagctgtttt 147  Q
    |||||||||||||||   ||||| ||||| ||||||||||| | ||||||||||||||| |||| || ||||||    
T  1892159 tttgagtttatctaccgtcataaacacttgtgagattgtttggcagagcttatgacatgtccattagttgtttt 1892232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 12361268 - 12361232
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||||| |||||||||||||||||||||||    
T  12361268 agcttatgacatgtccataagctgttttcaacttatt 12361232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 6864408 - 6864473
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatgacatgcccataa 139  Q
    ||||||| |||||| |  |||||||||||| || | ||||| |||||||||||| |||||||||||    
T  6864408 tttgagtctatctatttgcataagcacttaagaaagtgtttggaagagcttatggcatgcccataa 6864473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 6945 - 6872
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatgacatgcccataagctgtttt 147  Q
    ||||||||||||||||  ||||| ||||| ||||| ||||| | ||||||||||||||| |||| || ||||||    
T  6945 tttgagtttatctactagcataaacacttgtgagactgtttgggagagcttatgacatgtccattagttgtttt 6872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 7351606 - 7351647
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgttta 115  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  7351606 tttgagtttatctactgacataagcacttgtgagattgttta 7351647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 9667981 - 9668015
Alignment:
Q  122 cttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||| |||||||||||||||||||||||    
T  9667981 cttatgacatgtccataagctgttttcaacttatt 9668015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 31774512 - 31774458
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatga 128  Q
    |||||||||||||||   ||||||||||||||||| ||||| |||||||| ||||    
T  31774512 tttgagtttatctaccggcataagcacttatgagactgtttggaagagctcatga 31774458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 2455945 - 2455892
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatg 127  Q
    |||||| ||||||||   |||||||||||  |||||||||||||||||||||||    
T  2455945 tttgagcttatctaccggcataagcacttgcgagattgtttagaagagcttatg 2455892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 3738145 - 3738109
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  3738145 agcttatgacatgtccataagctgctttcaacttatt 3738109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 31624166 - 31624130
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||||||  ||||||||||||||||||||||    
T  31624166 agcttatgacatgttcataagctgttttcaacttatt 31624130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 32515376 - 32515429
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatg 127  Q
    |||||||||||||||| |||||||||||| ||||| ||||| | ||||||||||    
T  32515376 tttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatg 32515429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 15581382 - 15581340
Alignment:
Q  81 ttatctactcacataagcacttatgagattgtttagaagagct 123  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||    
T  15581382 ttatctactgacataagcacttgtgagattgtttggaagagct 15581340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 11695934 - 11695901
Alignment:
Q  123 ttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||| |||||||||||||||||||||||    
T  11695934 ttatgacatgtccataagctgttttcaacttatt 11695901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 6292627 - 6292587
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgttt 114  Q
    |||||| ||||||||| |||||||||||| |||||||||||    
T  6292627 tttgagcttatctactgacataagcacttttgagattgttt 6292587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 29723565 - 29723529
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  29723565 agcttatgacatgtccataaactgttttcaacttatt 29723529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 35925766 - 35925730
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||||||  ||||||||||||||||||||||    
T  35925766 agcttatgacatgttcataagctgttttcaacttatt 35925730  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 40667524 - 40667484
Alignment:
Q  92 cataagcacttatgagattgtttagaagagcttatgacatg 132  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  40667524 cataagcacttgtgagattgtttggaagagcttatgacatg 40667484  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 1939328 - 1939362
Alignment:
Q  122 cttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||| |||||||||||||||||||||||    
T  1939328 cttatgacatgtccataagctgttttcaacttatt 1939362  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 10285934 - 10285900
Alignment:
Q  122 cttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||| |||||||||||||||||||||||    
T  10285934 cttatgacatgtccataagctgttttcaacttatt 10285900  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 34652032 - 34652066
Alignment:
Q  122 cttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||| |||||||||||||||||||||||    
T  34652032 cttatgacatgtccataagctgttttcaacttatt 34652066  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 1647312 - 1647276
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  1647312 agcttatgacatgctcataagctgttttcagcttatt 1647276  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 13869049 - 13869125
Alignment:
Q  80 tttatctactcacataagcacttatgagattgtttagaagagcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||| |||||||||||||||||| | |||   ||| ||||||||| | | ||||| ||||||||| |||||    
T  13869049 tttatctactgacataagcacttatgagactatttgagagaacttatgacaagtctataagttgttttcaaattatt 13869125  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 154
Target Start/End: Complemental strand, 306402 - 306368
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaactta 154  Q
    |||||||||||||||||||||||||||||| ||||    
T  306402 agcttatgacatgcccataagctgttttcagctta 306368  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 24048675 - 24048621
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatga 128  Q
    |||||||||||||||| ||||||| |||||  ||| ||||| |||||||||||||    
T  24048675 tttgagtttatctactgacataagtacttaaaagactgtttggaagagcttatga 24048621  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 45078352 - 45078318
Alignment:
Q  122 cttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||| |||||||||||||||||||||||    
T  45078352 cttatgacatgtccataagctgttttcaacttatt 45078318  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 24363535 - 24363575
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgttt 114  Q
    ||||||||||||||||  |||||||||||||||||| ||||    
T  24363535 tttgagtttatctactagcataagcacttatgagatagttt 24363575  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 7908017 - 7907963
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatga 128  Q
    |||||||||||||| | |||||| ||||||||||| ||||| ||||| |||||||    
T  7908017 tttgagtttatctaataacataaacacttatgagactgtttggaagaacttatga 7907963  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 36542221 - 36542258
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattg 111  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  36542221 tttgagcttatctactaacataagcacttatgagattg 36542258  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 21768191 - 21768227
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  21768191 agcttatgacatgtccatacgctgttttcaacttatt 21768227  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 98634 - 98670
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||||||  ||||||||||||||||||||||    
T  98634 agcttatgacatgttcataagctgttttcaacttatt 98670  T

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