View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4590_high_2 (Length: 396)
Name: NF4590_high_2
Description: NF4590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4590_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 380
Target Start/End: Original strand, 8373697 - 8374071
Alignment:
| Q |
13 |
gaaagggaatataaatttctataattcaagcacaatatcttaatcttaata---cata------tcacttataattcaaggtacactacatgtcatggta |
103 |
Q |
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| T |
8373697 |
gaaagggaatataaatttctataattcaagcacaatatcttaatcttaatagtacatactattatcacttataattcaag-----ctacatgtcatggta |
8373791 |
T |
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| Q |
104 |
gtggagaagtgacaaaaatttacctttgggtaatagtatgcctacttttgagattttttactcgttaaagtaattatttttacctacatacgtcacaaat |
203 |
Q |
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| T |
8373792 |
gtggagaagtgacaaaaatttacccttgggtaatagtatgcctacttttgagattttttactcgttaaagtaattatttttacctacatacgtcacaaat |
8373891 |
T |
|
| Q |
204 |
gtgaaagttttaatctctgaggtttgcat-----tttatgtataagctcgtgcacaactgtatgctatttcg-ttttggctcaagagattataattaatc |
297 |
Q |
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| T |
8373892 |
gtaaaagttttaatctctgaggtttgcatagagatttatgtataagctcgtgcacaactgtatgctatttcgtttttggctcaagagattataattaatc |
8373991 |
T |
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| Q |
298 |
tagctagctttacttgtggatgccacgacgaatgaactttgttaaagtatcgaaacgtagatgcaacgattgaggcatgaaag |
380 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
8373992 |
tagctagctttaattgtggatgcc---acgaatgaactttgttaaagtattgaaacgtagatgcaacgattgaggcattaaag |
8374071 |
T |
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