View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4590_low_1 (Length: 508)
Name: NF4590_low_1
Description: NF4590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4590_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 19 - 474
Target Start/End: Complemental strand, 32244524 - 32244072
Alignment:
| Q |
19 |
aatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattccatat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32244524 |
aatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattccatat |
32244425 |
T |
|
| Q |
119 |
gtaaagataccaacaaatatacactctgtgatgtctctgtgcacatatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatgctga |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
32244424 |
gtaaagataccaacaaatatacactctgtgatgtctctgtgcacatatat--cttaatgtgatgtgtaggaaattaagaattcataggcatgcatggtga |
32244327 |
T |
|
| Q |
219 |
agaatgtcatgaactcagcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactccacaggttcttctcttcacc |
318 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32244326 |
agaatgtcatgaact-agcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactccacaggttcttctcttcacc |
32244228 |
T |
|
| Q |
319 |
aattcattcaccaaactcacaaacacaatgaggaagttctctctatctttgctttctctttccttgctactttttacatgtttagctactcgctctgagt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
32244227 |
aattcattcaccaaactcacaaacacaatgaggaagttctctctatctttgctttctctttccttgctgctttttacatgtttagctacacgctctgagt |
32244128 |
T |
|
| Q |
419 |
ttgataggttcaaccaatgtcagctgaacaatatcaatgcattggaaccagaccac |
474 |
Q |
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||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32244127 |
atgaaaggttcaaccaatgccagctgaacaatatcaatgcattggaaccagaccac |
32244072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 474
Target Start/End: Complemental strand, 32250233 - 32249781
Alignment:
| Q |
19 |
aatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattccatat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
32250233 |
aatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatatatttgttctcattcatttaactgcagtcaggattccatat |
32250134 |
T |
|
| Q |
119 |
gtaaagataccaacaaatatacactctgtgatgtctctgtgcacatatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatgctga |
218 |
Q |
| |
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|| |||||| |||||||||||| |||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
32250133 |
gtgaagatagcaacaaatataccctctgtgatgtctctg--cacatatctatcataatgtgatgtgtaggaaattaagaattcataggcatgcatggtga |
32250036 |
T |
|
| Q |
219 |
agaatgtcatgaactcagcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactccacaggttcttctcttcacc |
318 |
Q |
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|
||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250035 |
agaatgtcatgaact-agcaacctacactgtgtgacgtgtccctttctcacgcttctcttcttactataaatcaccactccacaggttcttctcttcacc |
32249937 |
T |
|
| Q |
319 |
aattcattcaccaaactcacaaacacaatgaggaagttctctctatctttgctttctctttccttgctactttttacatgtttagctactcgctctgagt |
418 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
32249936 |
aattcgttcaccaaactcacaaacacaatgaggaagttctctctatctttgctttctctttccttgctgctttttacatgtttagctacacgctctgagt |
32249837 |
T |
|
| Q |
419 |
ttgataggttcaaccaatgtcagctgaacaatatcaatgcattggaaccagaccac |
474 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32249836 |
atgaaaggttcaaccaatgccagctgaacaatatcaatgcattggaaccagaccac |
32249781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 163 - 474
Target Start/End: Complemental strand, 32254912 - 32254601
Alignment:
| Q |
163 |
atatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtccct |
262 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32254912 |
atatatataataatgtgatgtgtaggaaattaagaattcataggcatgcatggtgaagaatgtcatgaacttagcaacctacactgtgtgacgtgtccct |
32254813 |
T |
|
| Q |
263 |
tcctcactcttctcttcttactataaatcaccactccacaggttcttctcttcaccaattcattcaccaaactcacaaacacaatgaggaagttctctct |
362 |
Q |
| |
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| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32254812 |
ttctcacgcttctcttcttactataaatcaccactccacaggttcttctcttcaccaattcattcaccaaactcacaaacacaatgaggaagttctctct |
32254713 |
T |
|
| Q |
363 |
atctttgctttctctttccttgctactttttacatgtttagctactcgctctgagtttgataggttcaaccaatgtcagctgaacaatatcaatgcattg |
462 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32254712 |
atctttgctttctctttccttgctactttttacatgtttagctactcgctctgagtttgataggttcaaccaatgtcagctgaacaatatcaatgcattg |
32254613 |
T |
|
| Q |
463 |
gaaccagaccac |
474 |
Q |
| |
|
|||||||||||| |
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|
| T |
32254612 |
gaaccagaccac |
32254601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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