View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4590_low_16 (Length: 231)
Name: NF4590_low_16
Description: NF4590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4590_low_16 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 47350176 - 47349963
Alignment:
| Q |
18 |
cttccaacttcgtaggttgaagctcgttctccttcacaatctcatcccaaactggacccttatccttcatcatctcagccaaccttaaacgaggacagtc |
117 |
Q |
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| T |
47350176 |
cttccaacttcgtaggttgaagctcgttctccttcacaatctcatcccaaactggacccttatccttcatcatctcagccaaccttaaacgaggaccgtc |
47350077 |
T |
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| Q |
118 |
ctcgtatgcatactcctcaatctcaaattgttccgtcaaaaccttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttcattc |
217 |
Q |
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| T |
47350076 |
ctcgtatccatactcctcaatctcaaattgttccgtcaaaaccttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttcattc |
47349977 |
T |
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| Q |
218 |
ttcgcatcagtatc |
231 |
Q |
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| T |
47349976 |
ttagcataagtatc |
47349963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 44 - 224
Target Start/End: Original strand, 3818733 - 3818916
Alignment:
| Q |
44 |
ttctccttcacaatctcatcccaaactggacccttatccttcatcatctcagccaaccttaaacgaggacagtcctcgt---atgcatactcctcaatct |
140 |
Q |
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| T |
3818733 |
ttctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgttaacttcaaacgaggaccttcctcgtcgaacccatactcctcaatcc |
3818832 |
T |
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| Q |
141 |
caaattgttccgtcaaaaccttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttcattcttcgcat |
224 |
Q |
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| T |
3818833 |
caaattgttccgcgataaccttccacaattgcttccacctaaaaacatcaccattactacaattgaatgcttcattcttagcat |
3818916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 47339144 - 47338961
Alignment:
| Q |
44 |
ttctccttcacaatctcatcccaaactggacccttatccttcatcatctcagccaaccttaaacgaggacagtcctcgt---atgcatactcctcaatct |
140 |
Q |
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| T |
47339144 |
ttctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgttaacttcaaacgaggaccttcctcgtcgaacccatactcctcaatcc |
47339045 |
T |
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| Q |
141 |
caaattgttccgtcaaaaccttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttcattcttcgcat |
224 |
Q |
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| T |
47339044 |
caaattgttccgcgataaccttccacaattgcttccacctaaaaacatcaccattactacaattgaatgcttcattcttagcat |
47338961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 47347614 - 47347431
Alignment:
| Q |
44 |
ttctccttcacaatctcatcccaaactggacccttatccttcatcatctcagccaaccttaaacgaggacagtcctcgt---atgcatactcctcaatct |
140 |
Q |
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| T |
47347614 |
ttctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgacaacttcaaacgaggaccttcctcgtcaaacccatactcctcaatcc |
47347515 |
T |
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| Q |
141 |
caaattgttccgtcaaaaccttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttcattcttcgcat |
224 |
Q |
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| T |
47347514 |
caaactgttccgccaaaaccttccatagttgtttccatctaaaaacatcaccattgctacagttaaaagcttcgttcttagcat |
47347431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 5390987 - 5391053
Alignment:
| Q |
158 |
accttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttcattcttcgcat |
224 |
Q |
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| T |
5390987 |
accttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcat |
5391053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 5399706 - 5399772
Alignment:
| Q |
158 |
accttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttcattcttcgcat |
224 |
Q |
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| T |
5399706 |
accttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcat |
5399772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 5394525 - 5394586
Alignment:
| Q |
158 |
accttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttcattctt |
219 |
Q |
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| T |
5394525 |
accttccacaaatgtttccacttgaaaacatcaccattactgcaattgaatgcttcattctt |
5394586 |
T |
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