View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4590_low_4 (Length: 358)
Name: NF4590_low_4
Description: NF4590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4590_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 5 - 308
Target Start/End: Original strand, 3498288 - 3498591
Alignment:
| Q |
5 |
ttggatcaaaggctacccctgctacaccacaacaatgggtagagggtgcagcttcagtactcacatatgctgaaaaatttgaaactgttgagcagtgaag |
104 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3498288 |
ttggatcaaaggctacccctgctacaccacaacactgggtagagggtgcagcttcagaactcacatatgctgaaaaatttgaaactgttgagcagtgaag |
3498387 |
T |
|
| Q |
105 |
tggtatagattgatcttgccaactgaacaaaaaggcaggtaaaggggcaaaaccaatccagttgggtgggctaagaggtgctgaagttgtaatacttgtc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3498388 |
tggtatagattgatcttgccaactgaacaaaaaggcaggtaaaggggcaaaaccaatccagttgggtgggctaagaggtgctgaagttgtaatacttgtc |
3498487 |
T |
|
| Q |
205 |
ttgggagaaaattccagaccatttccctgtccaggcaaaaccgcccatactataacggtagctggattaaaagctagcacaccggccacgtgtaacatac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3498488 |
ttgggagaaaattccagaccatttccctgtccaggcaaaaccacccatactataacggtagctggactaaaagctagcacaccggccacgtgtaacatac |
3498587 |
T |
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| Q |
305 |
cact |
308 |
Q |
| |
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|||| |
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| T |
3498588 |
cact |
3498591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 293
Target Start/End: Original strand, 3510582 - 3510734
Alignment:
| Q |
144 |
taaaggggcaaaaccaatccagttgggtgggctaagaggtg---ctgaagttgtaatacttgtcttgggagaaaattccagaccatttccctgtccaggc |
240 |
Q |
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|||||| ||||||||| |||||||||||| ||||||||||| | | | | |||||| ||||||||||||||| |||| |||||| | |||||| |
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| T |
3510582 |
taaaggtgcaaaaccactccagttgggtgcgctaagaggtggcacgccattattgatacttttcttgggagaaaattggagactatttccacgaccaggc |
3510681 |
T |
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| Q |
241 |
aaaaccgcccatactataacggtagctggattaaaagctagcacaccggccac |
293 |
Q |
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| |||| ||||||| |||| || ||||||||||| |||| ||||||||||||| |
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| T |
3510682 |
ataacctcccatacaataatggcagctggattaacagctggcacaccggccac |
3510734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 3510530 - 3510583
Alignment:
| Q |
58 |
tcagtactcacatatgctgaaaaatttgaaactgttgagcagtgaagtggtata |
111 |
Q |
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|||| |||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
3510530 |
tcaggactcacatatgctgaaaattttgaaactggcgagcagtgaagtggtata |
3510583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 127 - 293
Target Start/End: Complemental strand, 31951725 - 31951559
Alignment:
| Q |
127 |
ctgaacaaaaaggcaggtaaaggggcaaaaccaatccagttgggtgggctaagaggtgctgaagttgtaatacttgtcttgggagaaaattccagaccat |
226 |
Q |
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|||||||||| ||||| |||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31951725 |
ctgaacaaaatggcagctaaaggagcaaaaccactctagttgggtgggctaagaggtgctgaagttgtaatacttgtcttgggagaaaattccagaccat |
31951626 |
T |
|
| Q |
227 |
ttccctgtccaggcaaaaccgcccatactataacggtagctggattaaaagctagcacaccggccac |
293 |
Q |
| |
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|||| |||||||| || || | ||||| ||||| |||||||||||||||||| ||||||||||||| |
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| T |
31951625 |
ttccatgtccaggagaagcctcacatacaataacagtagctggattaaaagctcgcacaccggccac |
31951559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 126 - 279
Target Start/End: Original strand, 31950874 - 31951027
Alignment:
| Q |
126 |
actgaacaaaaaggcaggtaaaggggcaaaaccaatccagttgggtgggctaagaggtgctgaagttgtaatacttgtcttgggagaaaattccagacca |
225 |
Q |
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||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
31950874 |
actgaacaaaaaggcagctaaaggagcaaaaccactccagttgggtgggctaagaggtgttgaagttgtaatacttgtcttgggagcaaattccagacca |
31950973 |
T |
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| Q |
226 |
tttccctgtccaggcaaaaccgcccatactataacggtagctggattaaaagct |
279 |
Q |
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|||| |||||| | ||||| ||||||| |||||||||||||||||||||||| |
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| T |
31950974 |
gttccatgtccatgagaaacctcccatacaataacggtagctggattaaaagct |
31951027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 31951791 - 31951721
Alignment:
| Q |
8 |
gatcaaaggctacccctgctacaccacaacaatgggtagagggtgcagcttcagtactcacatatgctgaa |
78 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||| ||| ||| |||||| |||||||||||||||| |
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| T |
31951791 |
gatcaaaggctacccctgctacaccacaacactgggtagtgggcgcaacttcagaactcacatatgctgaa |
31951721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 31950808 - 31950879
Alignment:
| Q |
7 |
ggatcaaaggctacccctgctacaccacaacaatgggtagagggtgcagcttcagtactcacatatgctgaa |
78 |
Q |
| |
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|||||||||||||||||| ||||||||||||| | ||||| | ||||||||||| |||||||||| ||||| |
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| T |
31950808 |
ggatcaaaggctacccctactacaccacaacacttggtagtgagtgcagcttcaaaactcacatatactgaa |
31950879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 35567823 - 35567868
Alignment:
| Q |
55 |
gcttcagtactcacatatgctgaaaaatttgaaactgttgagcagt |
100 |
Q |
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||||||| |||||||||||| |||||||||||||||| |||||||| |
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| T |
35567823 |
gcttcaggactcacatatgccgaaaaatttgaaactggtgagcagt |
35567868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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