View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4590_low_6 (Length: 339)
Name: NF4590_low_6
Description: NF4590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4590_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 24421522 - 24421376
Alignment:
| Q |
1 |
gcaacttttccaagtccatcttgctggtcacgttccaagaaagatagtgcacacaaaacaagtccaacaaaaccaaaagaatctgttcaaaacaatcctc |
100 |
Q |
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| T |
24421522 |
gcaacttttccaagtccatcttgctggtcacgttccaagaaagatagtgcacacaaaacaagtccaacaaaaccaaaagaatctgttcaaaacaatcctc |
24421423 |
T |
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| Q |
101 |
caccggtaatgaaaatcgaaaaggaagatgaaaagccgccaccacag |
147 |
Q |
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| T |
24421422 |
caccggtaatgaaaatcgaaaaggaagatgaaaagccgccaccacag |
24421376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 198 - 324
Target Start/End: Complemental strand, 24421337 - 24421211
Alignment:
| Q |
198 |
taatgaagctgttgttgctacacctgcaaaaccaaagagacctcacaatgtgaagagactagcaagtgcagggttaaaagcagattcagttttacagcga |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24421337 |
taatgaagctgttgttgctacacctgcaaaaccaaagagacctcacaatgtgaagagactagcaagtgcagggctaaaagcagattcagttttacagcga |
24421238 |
T |
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| Q |
298 |
aaaacggttagtcttaaggagttttat |
324 |
Q |
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| T |
24421237 |
aaaacggttagtcttaaggagttttat |
24421211 |
T |
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