View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4591-Insertion-1 (Length: 1030)
Name: NF4591-Insertion-1
Description: NF4591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4591-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 335 - 670
Target Start/End: Complemental strand, 10140241 - 10139905
Alignment:
| Q |
335 |
aatatccaatccacgaaaaacacgacttgttatcttccgttcattttcacaaatacacggtcacgatcttcactaaattcagacttaacaatttttcatt |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10140241 |
aatatccaatccacgaaaaacacgacttgttatcttccgttcattttcacaaatacacggtcacgatcttcactaaattcagacttaacaatttttcatt |
10140142 |
T |
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| Q |
435 |
ctttaaaacatcaacacgttaaattcttaaatttcgtagaaaaatagtagtctcaggaagnnnnnnnntacaataaattattgtcactaacactagca-c |
533 |
Q |
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| T |
10140141 |
ttttaaaacatcaacacgttaaattcttaaatttcgtagaaaaatagtagtctcaggaagaaaaaaaatacaataaattattgtcactaacactagcacc |
10140042 |
T |
|
| Q |
534 |
cacgatcattgttttttcttcttctttctgattgcccaaaaaagaataataatgggctattctaacgggccttctcttacaacatcactatttgtttcag |
633 |
Q |
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| T |
10140041 |
catgatcattgttttttcttcttctttctgattgcccaaaaaagaataataatgggctattctaacgggccttctcttacaacatcactatttgtttcag |
10139942 |
T |
|
| Q |
634 |
atccattaagagaaaaggggaaattatgcaataatta |
670 |
Q |
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| T |
10139941 |
atccattaagagaaaaagggaaattatgcaataatta |
10139905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 752 - 1001
Target Start/End: Complemental strand, 10139866 - 10139614
Alignment:
| Q |
752 |
atgttagtgttgcaaaatact--tatgtataaattgaatgcgagtttagtagaatcacaatgattaactataaaataaaagttacattttattgctttaa |
849 |
Q |
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| T |
10139866 |
atgttagtggtgcaaaatactagtatgtatgaattgaatgcgagtttagtataatcacaatgattaactataaaataaaagttgcatttaattgctttaa |
10139767 |
T |
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| Q |
850 |
tacaattatattcactgcgattttaaattatctatttctaatcgaccgtttttattagtatctcaaaccaannnnnnnnacaaccataaaactc-aatta |
948 |
Q |
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| T |
10139766 |
tacaatcatattcactgcaattttaaattatctatttctaatcgaccatttttattggtatctcaaaccaa-tttttttacaaccataaaactcaaatca |
10139668 |
T |
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| Q |
949 |
gagttattacctttaaagatccgagttccatt--caatttaatgtcagttatgca |
1001 |
Q |
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| T |
10139667 |
gagttatta-ctttaaagatcctagttcaatttcaaatttaatgtgagttatgca |
10139614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 321 - 458
Target Start/End: Complemental strand, 10140376 - 10140239
Alignment:
| Q |
321 |
tgcatgttattacgaatatccaatccacgaaaaacacgacttgttatcttccgttcattttcacaaatacacggtcacgatcttcactaaattcagactt |
420 |
Q |
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| T |
10140376 |
tgcatgttactacgaatatccaatccacgaaaaacacgacttgttatcttccgttcattttcacaaatacacggtcacgatcttcactaaattcagactt |
10140277 |
T |
|
| Q |
421 |
aacaatttttcattctttaaaacatcaacacgttaaat |
458 |
Q |
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| T |
10140276 |
aacaatttttcattttttaaaacatcaacacgttaaat |
10140239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 158 - 295
Target Start/End: Complemental strand, 10140537 - 10140395
Alignment:
| Q |
158 |
atgatttcatatttacttgaaatcgtgccattatatat-----tttttaaaatctaaactagtatctttatcatttgcagccgttccttccttagcttct |
252 |
Q |
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| T |
10140537 |
atgatttcatatttacttaaaatcgtgccattatatatatatatttttaaaatctaaactagtatctttatcatttgcagccgttcctaccttagcttct |
10140438 |
T |
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| Q |
253 |
tccaaatttctacatgatgcatagcattttaaagagccagtgg |
295 |
Q |
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| T |
10140437 |
tccaaatttctacatgatgcatagcattttaaagagccagtgg |
10140395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 10140661 - 10140579
Alignment:
| Q |
8 |
tcattgatatctgagacatcaaaattaaagtcttttaatataagtgttttaagacttgaatattgatgttgcacctaaatgatg |
91 |
Q |
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| T |
10140661 |
tcattgatatctgaaacatcaaaattaaagtcttttaatataagtg-ttaaagacttgaatattgatgttgcaactaaatgatg |
10140579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 22727165 - 22727131
Alignment:
| Q |
114 |
aataagctaaaatggaatatattagatcacaaaga |
148 |
Q |
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| T |
22727165 |
aataagctaaaatggaatatattagatcacaaaga |
22727131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 340 - 434
Target Start/End: Original strand, 29400804 - 29400898
Alignment:
| Q |
340 |
ccaatccacgaaaaacacgacttgttatcttccgttcattttcacaaatacacggtcacgatcttcactaaattcagacttaacaatttttcatt |
434 |
Q |
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|||||||||||||| |||||||| |||||| ||||| ||||||| |||||||| || ||| | ||| |||| | |||| ||||||||| |||| |
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| T |
29400804 |
ccaatccacgaaaaccacgacttcttatctgccgtttattttcatcaatacacgaccatgatgtccaccaaatccggactaaacaattttccatt |
29400898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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